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The map label for this gene is 226225100

Identifier: 226225100

GI number: 226225100

Start: 2600954

End: 2602027

Strand: Reverse

Name: 226225100

Synonym: Lm4b_02521

Alternate gene names: NA

Gene position: 2602027-2600954 (Counterclockwise)

Preceding gene: 226225101

Following gene: 226225099

Centisome position: 89.33

GC content: 38.08

Gene sequence:

>1074_bases
ATGAGTGGAGGCGCAAAGAAAAACCTATTTAATATTGCGATTGTATTAGCCATTAGCATCGGCTTCATTATTTGGCAATT
TCAAGGCGTAGATATCTCCACTTTTTTTGCTTCGATGTTAAAAGTGAACCCTTGGTGGCTCTCGGCTGCCTTTGCTGCAA
TGTTTATTTATTGGTTTTTAGAAGCGGTTGTTTTACAAACTGCATCTAAACCAGCGAATAAGGACCAACGTTTTTTTTCG
TCATTCCGGATTACAATGATTGGCCAATTTTTTAATACCATTACTCCAATGGCGACTGGCGGACAGCCTGCGCAACTCGT
TATGTTGACGAAGCAAGGCATGGATGCGGGGCGAGGAAGTTCAGTCTTACTTGTAAAATTCATTATTTACCAAGCGATGG
TCGTACTGAACTTTTTAGTTATCTTGATTTTTGGTATTCATTATTTAATGACTGGCGTGACACAATTGAAATTCCTTGTT
TTACTAGGGTTTGGTGTGCATGTTATTGTCATCGCTGCGCTTATTTTAGTAGGAAGAAGCCAAAAGTTCACGACAAAATT
AGTGCACGTTTTACTTATACCAACACGTTTATTTATGAAAAAAGAAAAAGTTTCTAATTTAAGAAATACATTAGATGAGA
AAATTATTACTTTCCATGAAGAAAGTAGCCGAATTGGTAAAGATTGGAAATTAATTGTTCGTTGTTGTTTTTATACAACG
TTGCAACTTTGGATTTACTTCTCAATCCCTTTCTTTATTTTACAAGCGATTGGTGTGACAGGAATTGGCCTGTATATGGC
GATTACGTATCATGCTTTTATTATTATGTTTGCGACAGTCATGCCAACGCCGGGTGGGGCTGGGGGAGCTGAGTATACTT
TCACTTTGTTATTCGGTATGTTACTCGGTCCGGCAAAACTCCTAATGGCACTTGTTTTATGGCGGATTATTACTTATTAT
AGCTGCATCGTTTTCGGGGCGGGCGCATTATTAATAAAAGATACAGCTTCGAAAAAAATTAAACCGCGTATCAAAGCACT
CGCAAAAGCACCAGCCAAAAATATACCACAATGA

Upstream 100 bases:

>100_bases
ACAAGCATCAAAACGAGGAGCGGCTTATTATTCAGAGGATCGACTGGCTGAAATATGGTTGGACTTTTATCAAGGATTAT
TAACGAAGGAGTGAAAGGTA

Downstream 100 bases:

>100_bases
TTAAAAGCTTGGGACGTAATGTTCCCAGCTTTTTAGGGAAAGCATTTCTTGCAAAGTAAAACAAATTAATGGATAATGAA
ACAGTATTACATGCTTCAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MSGGAKKNLFNIAIVLAISIGFIIWQFQGVDISTFFASMLKVNPWWLSAAFAAMFIYWFLEAVVLQTASKPANKDQRFFS
SFRITMIGQFFNTITPMATGGQPAQLVMLTKQGMDAGRGSSVLLVKFIIYQAMVVLNFLVILIFGIHYLMTGVTQLKFLV
LLGFGVHVIVIAALILVGRSQKFTTKLVHVLLIPTRLFMKKEKVSNLRNTLDEKIITFHEESSRIGKDWKLIVRCCFYTT
LQLWIYFSIPFFILQAIGVTGIGLYMAITYHAFIIMFATVMPTPGGAGGAEYTFTLLFGMLLGPAKLLMALVLWRIITYY
SCIVFGAGALLIKDTASKKIKPRIKALAKAPAKNIPQ

Sequences:

>Translated_357_residues
MSGGAKKNLFNIAIVLAISIGFIIWQFQGVDISTFFASMLKVNPWWLSAAFAAMFIYWFLEAVVLQTASKPANKDQRFFS
SFRITMIGQFFNTITPMATGGQPAQLVMLTKQGMDAGRGSSVLLVKFIIYQAMVVLNFLVILIFGIHYLMTGVTQLKFLV
LLGFGVHVIVIAALILVGRSQKFTTKLVHVLLIPTRLFMKKEKVSNLRNTLDEKIITFHEESSRIGKDWKLIVRCCFYTT
LQLWIYFSIPFFILQAIGVTGIGLYMAITYHAFIIMFATVMPTPGGAGGAEYTFTLLFGMLLGPAKLLMALVLWRIITYY
SCIVFGAGALLIKDTASKKIKPRIKALAKAPAKNIPQ
>Mature_356_residues
SGGAKKNLFNIAIVLAISIGFIIWQFQGVDISTFFASMLKVNPWWLSAAFAAMFIYWFLEAVVLQTASKPANKDQRFFSS
FRITMIGQFFNTITPMATGGQPAQLVMLTKQGMDAGRGSSVLLVKFIIYQAMVVLNFLVILIFGIHYLMTGVTQLKFLVL
LGFGVHVIVIAALILVGRSQKFTTKLVHVLLIPTRLFMKKEKVSNLRNTLDEKIITFHEESSRIGKDWKLIVRCCFYTTL
QLWIYFSIPFFILQAIGVTGIGLYMAITYHAFIIMFATVMPTPGGAGGAEYTFTLLFGMLLGPAKLLMALVLWRIITYYS
CIVFGAGALLIKDTASKKIKPRIKALAKAPAKNIPQ

Specific function: Unknown

COG id: COG0392

COG function: function code S; Predicted integral membrane protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0104 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022791
- InterPro:   IPR005242 [H]

Pfam domain/function: PF03706 UPF0104 [H]

EC number: NA

Molecular weight: Translated: 39788; Mature: 39656

Theoretical pI: Translated: 10.66; Mature: 10.66

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGGAKKNLFNIAIVLAISIGFIIWQFQGVDISTFFASMLKVNPWWLSAAFAAMFIYWFL
CCCCCHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
EAVVLQTASKPANKDQRFFSSFRITMIGQFFNTITPMATGGQPAQLVMLTKQGMDAGRGS
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCC
SVLLVKFIIYQAMVVLNFLVILIFGIHYLMTGVTQLKFLVLLGFGVHVIVIAALILVGRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QKFTTKLVHVLLIPTRLFMKKEKVSNLRNTLDEKIITFHEESSRIGKDWKLIVRCCFYTT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHHHHH
LQLWIYFSIPFFILQAIGVTGIGLYMAITYHAFIIMFATVMPTPGGAGGAEYTFTLLFGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
LLGPAKLLMALVLWRIITYYSCIVFGAGALLIKDTASKKIKPRIKALAKAPAKNIPQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
SGGAKKNLFNIAIVLAISIGFIIWQFQGVDISTFFASMLKVNPWWLSAAFAAMFIYWFL
CCCCHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
EAVVLQTASKPANKDQRFFSSFRITMIGQFFNTITPMATGGQPAQLVMLTKQGMDAGRGS
HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCC
SVLLVKFIIYQAMVVLNFLVILIFGIHYLMTGVTQLKFLVLLGFGVHVIVIAALILVGRS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
QKFTTKLVHVLLIPTRLFMKKEKVSNLRNTLDEKIITFHEESSRIGKDWKLIVRCCFYTT
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCHHHHHHHHHHHHHH
LQLWIYFSIPFFILQAIGVTGIGLYMAITYHAFIIMFATVMPTPGGAGGAEYTFTLLFGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
LLGPAKLLMALVLWRIITYYSCIVFGAGALLIKDTASKKIKPRIKALAKAPAKNIPQ
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEEECCHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]