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The map label for this gene is whiA [H]

Identifier: 226225020

GI number: 226225020

Start: 2519267

End: 2520238

Strand: Reverse

Name: whiA [H]

Synonym: Lm4b_02441

Alternate gene names: 226225020

Gene position: 2520238-2519267 (Counterclockwise)

Preceding gene: 226225021

Following gene: 226225019

Centisome position: 86.53

GC content: 40.53

Gene sequence:

>972_bases
ATGTCATTTGCATCGGAAACCAAGAAAGAATTAACCCATATGGACGTAAGTGATAGCGATGCAAAAGTGGAACTCGCAGC
TTTTATTCGAATGAATGGTGCCATCTCGTTTTCGAATCAATTAGTGATAATGGATGTCCAAACCGAGAATGCAGCCATAG
CTAGACGAATGTATCAATTACTGAAAGACTTATACGAAGTGCCAATAGAACTTCTTGTACGTCGCAAAATGAAGTTGAAA
AAAAATAATGTTTATATAGTTCGCTTGAAGTCAGGTACACGGGGGATTTTGGAAGATTTACGGATACTAGAGCCACCGAT
GACGTTTACGAAATCGATTGATAGGGGATTTGTTAAGAAGAGGAGCGCCAAACGTGCTTATTTACGTGGAGCCTTTTTGG
CAAGTGGGTCAGTTAATAATCCGGAAACTTCTTCTTATCATTTAGAAATTTTCTCTGTTTATGAGGAGCACAATGAGGCG
ATTTGCGCTTTGATGAATCAATTCGATCTCAATGCGCGAACGCTTGAACGGAAAAATGGTTTTATTACCTATTTGAAAGA
AGCGGAAAAAATCACGGAATTCTTGAGTATTATCGGAGCAACTAGCGCGCTTCTTCATTTTGAGGATGTTCGGATTATGC
GTGATATGCGGAATTCGGTGAACAGGCTAGTGAACTGTGAAACGGCGAATCTCAACAAGACAATTAATGCGGCTGTTAGG
CAAATCGATAATATCAAGTATATCCAATCAACCGTTGGGCTAGAAGCTTTACCAGAACGACTGCGTGAGATTGCAGCGCT
TCGTATAGCTAATGAAGATGTTACCTTAAAAGAGCTAGGCGAAATGCTGACAACAGGTCAAGTAAGTAAATCAGGTATTA
ATCATCGTCTCCGGAAACTAGATCAGATTGCAGAGCGCCTTAGAAGCGGGGAAACACCAGCACAAGTAGGACTGAAAATC
AGTAATAGTTAA

Upstream 100 bases:

>100_bases
TCTACAGAGGATGGCCTTGTGCGCCATGCCGCTGAAAAGGTGGCGGACGCGCTTTTAGCGATGTTACCTAACCAAACTAT
TGAAAAGGAGTGAGTAAGCC

Downstream 100 bases:

>100_bases
TTAAAAAGAAAAGGATGCGAATTAGAATGTCCAAATTATTTTCAGAATATAAATTAAAAGATGTAACGCTAAAAAACAGA
ATTGTTATGTCACCAATGTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 323; Mature: 322

Protein sequence:

>323_residues
MSFASETKKELTHMDVSDSDAKVELAAFIRMNGAISFSNQLVIMDVQTENAAIARRMYQLLKDLYEVPIELLVRRKMKLK
KNNVYIVRLKSGTRGILEDLRILEPPMTFTKSIDRGFVKKRSAKRAYLRGAFLASGSVNNPETSSYHLEIFSVYEEHNEA
ICALMNQFDLNARTLERKNGFITYLKEAEKITEFLSIIGATSALLHFEDVRIMRDMRNSVNRLVNCETANLNKTINAAVR
QIDNIKYIQSTVGLEALPERLREIAALRIANEDVTLKELGEMLTTGQVSKSGINHRLRKLDQIAERLRSGETPAQVGLKI
SNS

Sequences:

>Translated_323_residues
MSFASETKKELTHMDVSDSDAKVELAAFIRMNGAISFSNQLVIMDVQTENAAIARRMYQLLKDLYEVPIELLVRRKMKLK
KNNVYIVRLKSGTRGILEDLRILEPPMTFTKSIDRGFVKKRSAKRAYLRGAFLASGSVNNPETSSYHLEIFSVYEEHNEA
ICALMNQFDLNARTLERKNGFITYLKEAEKITEFLSIIGATSALLHFEDVRIMRDMRNSVNRLVNCETANLNKTINAAVR
QIDNIKYIQSTVGLEALPERLREIAALRIANEDVTLKELGEMLTTGQVSKSGINHRLRKLDQIAERLRSGETPAQVGLKI
SNS
>Mature_322_residues
SFASETKKELTHMDVSDSDAKVELAAFIRMNGAISFSNQLVIMDVQTENAAIARRMYQLLKDLYEVPIELLVRRKMKLKK
NNVYIVRLKSGTRGILEDLRILEPPMTFTKSIDRGFVKKRSAKRAYLRGAFLASGSVNNPETSSYHLEIFSVYEEHNEAI
CALMNQFDLNARTLERKNGFITYLKEAEKITEFLSIIGATSALLHFEDVRIMRDMRNSVNRLVNCETANLNKTINAAVRQ
IDNIKYIQSTVGLEALPERLREIAALRIANEDVTLKELGEMLTTGQVSKSGINHRLRKLDQIAERLRSGETPAQVGLKIS
NS

Specific function: May be required for sporulation [H]

COG id: COG1481

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the whiA transcriptional regulatory family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003802
- InterPro:   IPR023054
- InterPro:   IPR018478 [H]

Pfam domain/function: PF02650 HTH_WhiA; PF10298 WhiA_N [H]

EC number: NA

Molecular weight: Translated: 36600; Mature: 36469

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFASETKKELTHMDVSDSDAKVELAAFIRMNGAISFSNQLVIMDVQTENAAIARRMYQL
CCCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCEEEECCCEEEEEECCCHHHHHHHHHHH
LKDLYEVPIELLVRRKMKLKKNNVYIVRLKSGTRGILEDLRILEPPMTFTKSIDRGFVKK
HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
RSAKRAYLRGAFLASGSVNNPETSSYHLEIFSVYEEHNEAICALMNQFDLNARTLERKNG
HHHHHHHHHHHHEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC
FITYLKEAEKITEFLSIIGATSALLHFEDVRIMRDMRNSVNRLVNCETANLNKTINAAVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
QIDNIKYIQSTVGLEALPERLREIAALRIANEDVTLKELGEMLTTGQVSKSGINHRLRKL
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
DQIAERLRSGETPAQVGLKISNS
HHHHHHHHCCCCCHHCCCEECCC
>Mature Secondary Structure 
SFASETKKELTHMDVSDSDAKVELAAFIRMNGAISFSNQLVIMDVQTENAAIARRMYQL
CCHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCEEEECCCEEEEEECCCHHHHHHHHHHH
LKDLYEVPIELLVRRKMKLKKNNVYIVRLKSGTRGILEDLRILEPPMTFTKSIDRGFVKK
HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
RSAKRAYLRGAFLASGSVNNPETSSYHLEIFSVYEEHNEAICALMNQFDLNARTLERKNG
HHHHHHHHHHHHEECCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCC
FITYLKEAEKITEFLSIIGATSALLHFEDVRIMRDMRNSVNRLVNCETANLNKTINAAVR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
QIDNIKYIQSTVGLEALPERLREIAALRIANEDVTLKELGEMLTTGQVSKSGINHRLRKL
HHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
DQIAERLRSGETPAQVGLKISNS
HHHHHHHHCCCCCHHCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]