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The map label for this gene is gbpA [H]

Identifier: 226225015

GI number: 226225015

Start: 2513160

End: 2514596

Strand: Reverse

Name: gbpA [H]

Synonym: Lm4b_02436

Alternate gene names: 226225015

Gene position: 2514596-2513160 (Counterclockwise)

Preceding gene: 226225017

Following gene: 226225013

Centisome position: 86.33

GC content: 39.46

Gene sequence:

>1437_bases
ATGAAGAAAATGACGAAGATTGGCATGTTTTTTGCGGTGTTTACGTTAGCTGTAGTTCTTTTTCAAACAACTGCTTCAGC
TCATGGATACATATCAAAACCAGCAAGTCGTGTATATTTAGCCAACAAAGGGATTAATGTTGGGGTTGGATCAGCACAAT
ATGAACCACAAAGTGTGGAGGCTCCAAAAGGATTTCCAGCAAGCGGACCTGCTGACGGGAGTATTGCGGGCGGTGGGAAA
TATTCACTGTTAGACGCTCAAACTGCAAACCGTTGGGCAAAAGTAGATATACAATCAGGCCCATTAACTGTAGAATGGAC
ATTAACTGCGCCACACAGAACAAGCAGCTGGCAATATTTTATTACTAAAAAGGGTTGGGACCCAAATAAACCGTTAACTA
GAGCATCATTAGAGCCACTCACAACGATTGAAGCGGATGGAAGCGTACCAAATGCTTTAACAAAACAAGAAATTAATATT
CCAGATGATCGTTCAGGATACTACGTTATTTTGGGCGTTTGGAACATTGCTGATACAGGAAATGCATTCTATCAAGTAAT
TGATGCAAACATTATTAATTCTAGTGTAGCACCAGCTGTTGACAACGAAGCGCCGACAGAACCGACTAATTTAGCAGCAA
CTACTACCGCTAAGAATGTAAGTTTGACCTGGACTGTTTCTACCGATAACGTAGGAATAAAAGGTTATGAAATTTTACGT
GATGGCGTAGTACTCGGAGAAAGTCAAACAGCTTCTTATGAGGATACAGCTGTAGAATCAAATACCGCATACACTTACAC
TGTTCGAGCAAAAGATTTCGCCGGAAACAAATCTACATTAAGCGACAGTATTGATGTGACGACAAAAGAAGCCCCAGCAG
TAGATAATGAAGCACCAACTGCACCAAAAAGTTTAATGTCTCATGGACAAACGGAGACAACTATTGCTCTTTGTTGGCAA
ACCTCCACAGATAATGTAGAAGTGAAAAATTATGAAATTTATCGTAACAATACAAAAATTGCAACATCCACGAAAACCAT
GTTTGAAGATACAAAATTAGCCAGCAATACAAGCTATAATTATAAAGTGTATGCAGTAGATACATCTGGCAATCGTTCAT
TAGTAAGTAATGAAATCACTATTAAAACAAAACCGCTAGATCCACTGAACACCTGGAAATCGGACCAAATTTACCATGCA
GGTGACCAAGTTTACTATAACGGAGTAGCTTATACAGCGAAATGGTGGACAAAAGGGAACACTCCAGATACAAGTGATGT
TTGGCAAACAGCAAGTAGAGATATCCAAATCTGGAATGCTCAAAAAGCCTATAATGGCGGAGATAAAGTTACGTATAACG
GAAAAACATACCAAGCGAAATGGTGGGTACGAGGCGAGAAGCCTGACAGTTCATCAATTTGGACATTATTAAATTAA

Upstream 100 bases:

>100_bases
CGAATGGTCAAACTAGGTCAAACGATAAAGTCTGAGGCGAATTATTTCTATAAAATTTAACAAAAAGGTATAATGAACTA
TGCTGAAAGGAAGGTGCATC

Downstream 100 bases:

>100_bases
TACTTGAGCCAGCAAATCTTTGGAGGCGCTGGCTTCTTCATTTAAAATAAAACTTGTAAAACACTACGAATTTCGCTATA
ATTATTATTCGTACGGTAAG

Product: chitinase and chitin binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 478; Mature: 478

Protein sequence:

>478_residues
MKKMTKIGMFFAVFTLAVVLFQTTASAHGYISKPASRVYLANKGINVGVGSAQYEPQSVEAPKGFPASGPADGSIAGGGK
YSLLDAQTANRWAKVDIQSGPLTVEWTLTAPHRTSSWQYFITKKGWDPNKPLTRASLEPLTTIEADGSVPNALTKQEINI
PDDRSGYYVILGVWNIADTGNAFYQVIDANIINSSVAPAVDNEAPTEPTNLAATTTAKNVSLTWTVSTDNVGIKGYEILR
DGVVLGESQTASYEDTAVESNTAYTYTVRAKDFAGNKSTLSDSIDVTTKEAPAVDNEAPTAPKSLMSHGQTETTIALCWQ
TSTDNVEVKNYEIYRNNTKIATSTKTMFEDTKLASNTSYNYKVYAVDTSGNRSLVSNEITIKTKPLDPLNTWKSDQIYHA
GDQVYYNGVAYTAKWWTKGNTPDTSDVWQTASRDIQIWNAQKAYNGGDKVTYNGKTYQAKWWVRGEKPDSSSIWTLLN

Sequences:

>Translated_478_residues
MKKMTKIGMFFAVFTLAVVLFQTTASAHGYISKPASRVYLANKGINVGVGSAQYEPQSVEAPKGFPASGPADGSIAGGGK
YSLLDAQTANRWAKVDIQSGPLTVEWTLTAPHRTSSWQYFITKKGWDPNKPLTRASLEPLTTIEADGSVPNALTKQEINI
PDDRSGYYVILGVWNIADTGNAFYQVIDANIINSSVAPAVDNEAPTEPTNLAATTTAKNVSLTWTVSTDNVGIKGYEILR
DGVVLGESQTASYEDTAVESNTAYTYTVRAKDFAGNKSTLSDSIDVTTKEAPAVDNEAPTAPKSLMSHGQTETTIALCWQ
TSTDNVEVKNYEIYRNNTKIATSTKTMFEDTKLASNTSYNYKVYAVDTSGNRSLVSNEITIKTKPLDPLNTWKSDQIYHA
GDQVYYNGVAYTAKWWTKGNTPDTSDVWQTASRDIQIWNAQKAYNGGDKVTYNGKTYQAKWWVRGEKPDSSSIWTLLN
>Mature_478_residues
MKKMTKIGMFFAVFTLAVVLFQTTASAHGYISKPASRVYLANKGINVGVGSAQYEPQSVEAPKGFPASGPADGSIAGGGK
YSLLDAQTANRWAKVDIQSGPLTVEWTLTAPHRTSSWQYFITKKGWDPNKPLTRASLEPLTTIEADGSVPNALTKQEINI
PDDRSGYYVILGVWNIADTGNAFYQVIDANIINSSVAPAVDNEAPTEPTNLAATTTAKNVSLTWTVSTDNVGIKGYEILR
DGVVLGESQTASYEDTAVESNTAYTYTVRAKDFAGNKSTLSDSIDVTTKEAPAVDNEAPTAPKSLMSHGQTETTIALCWQ
TSTDNVEVKNYEIYRNNTKIATSTKTMFEDTKLASNTSYNYKVYAVDTSGNRSLVSNEITIKTKPLDPLNTWKSDQIYHA
GDQVYYNGVAYTAKWWTKGNTPDTSDVWQTASRDIQIWNAQKAYNGGDKVTYNGKTYQAKWWVRGEKPDSSSIWTLLN

Specific function: Probably interacts with GlcNAc residues. May promote attachment to both epithelial cell surfaces and chitin [H]

COG id: COG3397

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 chitin-binding type-4 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004302
- InterPro:   IPR020879
- InterPro:   IPR014756 [H]

Pfam domain/function: PF03067 Chitin_bind_3 [H]

EC number: NA

Molecular weight: Translated: 52286; Mature: 52286

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS50853 FN3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKMTKIGMFFAVFTLAVVLFQTTASAHGYISKPASRVYLANKGINVGVGSAQYEPQSVE
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCEEEEEECCCEECCCCCCCCCCCCC
APKGFPASGPADGSIAGGGKYSLLDAQTANRWAKVDIQSGPLTVEWTLTAPHRTSSWQYF
CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCEEEEEEEECCCCCCCEEEE
ITKKGWDPNKPLTRASLEPLTTIEADGSVPNALTKQEINIPDDRSGYYVILGVWNIADTG
EEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC
NAFYQVIDANIINSSVAPAVDNEAPTEPTNLAATTTAKNVSLTWTVSTDNVGIKGYEILR
CEEEEEEECHHHCCCCCCCCCCCCCCCCCCEEEEEEECEEEEEEEEECCCCCCCHHEEEE
DGVVLGESQTASYEDTAVESNTAYTYTVRAKDFAGNKSTLSDSIDVTTKEAPAVDNEAPT
CCEEECCCCCCCCCCCEECCCCEEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCC
APKSLMSHGQTETTIALCWQTSTDNVEVKNYEIYRNNTKIATSTKTMFEDTKLASNTSYN
CHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEEECCEEEEECCHHHHHCCCCCCCCCCC
YKVYAVDTSGNRSLVSNEITIKTKPLDPLNTWKSDQIYHAGDQVYYNGVAYTAKWWTKGN
EEEEEEECCCCCEEEECEEEEEECCCCHHHCCCCCCEEECCCEEEECCEEEEEEEEECCC
TPDTSDVWQTASRDIQIWNAQKAYNGGDKVTYNGKTYQAKWWVRGEKPDSSSIWTLLN
CCCHHHHHHHCCCCEEEEECCCCCCCCCEEEECCEEEEEEEEEECCCCCCCCEEEEEC
>Mature Secondary Structure
MKKMTKIGMFFAVFTLAVVLFQTTASAHGYISKPASRVYLANKGINVGVGSAQYEPQSVE
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCEEEEEECCCEECCCCCCCCCCCCC
APKGFPASGPADGSIAGGGKYSLLDAQTANRWAKVDIQSGPLTVEWTLTAPHRTSSWQYF
CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCEEEEEEEECCCCCCCEEEE
ITKKGWDPNKPLTRASLEPLTTIEADGSVPNALTKQEINIPDDRSGYYVILGVWNIADTG
EEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCC
NAFYQVIDANIINSSVAPAVDNEAPTEPTNLAATTTAKNVSLTWTVSTDNVGIKGYEILR
CEEEEEEECHHHCCCCCCCCCCCCCCCCCCEEEEEEECEEEEEEEEECCCCCCCHHEEEE
DGVVLGESQTASYEDTAVESNTAYTYTVRAKDFAGNKSTLSDSIDVTTKEAPAVDNEAPT
CCEEECCCCCCCCCCCEECCCCEEEEEEEEECCCCCCCCCCCCCEEEECCCCCCCCCCCC
APKSLMSHGQTETTIALCWQTSTDNVEVKNYEIYRNNTKIATSTKTMFEDTKLASNTSYN
CHHHHHHCCCCCEEEEEEEECCCCCEEEEEEEEEECCEEEEECCHHHHHCCCCCCCCCCC
YKVYAVDTSGNRSLVSNEITIKTKPLDPLNTWKSDQIYHAGDQVYYNGVAYTAKWWTKGN
EEEEEEECCCCCEEEECEEEEEECCCCHHHCCCCCCEEECCCEEEECCEEEEEEEEECCC
TPDTSDVWQTASRDIQIWNAQKAYNGGDKVTYNGKTYQAKWWVRGEKPDSSSIWTLLN
CCCHHHHHHHCCCCEEEEECCCCCCCCCEEEECCEEEEEEEEEECCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12368813 [H]