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The map label for this gene is 226224926

Identifier: 226224926

GI number: 226224926

Start: 2422679

End: 2424049

Strand: Reverse

Name: 226224926

Synonym: Lm4b_02346

Alternate gene names: NA

Gene position: 2424049-2422679 (Counterclockwise)

Preceding gene: 226224928

Following gene: 226224925

Centisome position: 83.22

GC content: 26.7

Gene sequence:

>1371_bases
ATGCTAGATTCAACAAAACTAGATTCAACAAAATTAGATTCAACAAAATATAAAACAAAAAATTATTTACACTTTGATTA
TAGAGTTAAAATTGAAAATGTAGAAAGCTATGTAACTGATCATTCGAAGATTGGAAATCATAGCTTTTTACCGTTAATAC
GTTATGTATCATCTTTTGAAAAAAGAATAGAAGAAAAAAATCCAGAGTTTGACAACCGGCCAATTAAGACTAAAGATAGA
GTAATTATGTATGCTGGACATATGGATAACTTTATTTATAAATATTATGCAGAAGTGTTGAACAAGGATTTTTACAATAA
ATTTTGTATGGAAAAAGGTATAGATGATTGTGTATCTGCATATCGAAACAATAAAGTGGGGAAATCTAATATTGATTTTG
CTGCTGAAATCATTAATCAAATGGTTAATTATAAGGAAGCTTATATATTGGTGGGAGATTTTACTAATTACTTTGATAAA
ATAAATCACGAATTACTTAAAAAGCATTTAGCAGAAGTGTTAAATCAGCCAAGGCTGTCAAAAGATTGGTTTAATGTGTT
TCGATCAATAACTAAATATGGATATTATGAAAAAAGTTTTTTGAATGAGGAATATGGAAGTGATGAAAGTATCAAACGCT
CTAATAAAAAAAGTTATTTTGAAAATATTTCTAAATTTAGAGAGTTTCAAAAAAATAACAAAACTTTATGTAATAAAAAT
AAATTTGGTATACCTCAAGGAAGTGCTATCAGCGCAGTATTTGCAAATATATATGCATCGGAATTTGATTTGAAGTTAAA
AGAAATTGCCGACGAATTTTCTGGGATATATAGAAGATACTCAGATGATTTTATACTAGTTATCCCTAAAAGCGATATAG
TAAATGAGCAAAAAATTAGAAGGATTGAAACTGATACAAGAAGGGTAGCTTCGGAATATAAAATAGAGTTGCATAAAGAT
AAAACAGGACTGTATTTATACGAGAATGATAAAATTTTTGACATAATTAGCAATGAAGTAAGCCATTTAGATTATTTAGG
TTTCGTTTTTGATGGCACTACAGTTAAAATGAGAGGGAAGAGTCCGTATAAATTTTACCGAAATGCAAAAAAACTTATAA
CGTTTGCTCAGAAAGTAAAAGTAAAAAAAGAATTGACTGATTTACCTTATAAGAAAAAAATTTATGGATTGTGTACAGAT
TTAGGAAAGAATTATAATAATCACGGTAACTTTATTTCATATGCAAAAAGAGCTCAAAAGAAATTTGATGAAATATCTCC
AAATACAAATAATTTAATAATGAATCAACTAAAAAATCGAAAAAAGAAAATCGAAAAGATGCTAGGTTATAAAATACATA
CTAAGATTTAA

Upstream 100 bases:

>100_bases
AAGTATGGGAATATTGACCTAAAGAGACGCAGAAAGGGATTTTAATTAAGTGTCGGACTTGTTGTCCCTTTCCGCTCCAA
AAAAAAGGCGTGAATTTAAG

Downstream 100 bases:

>100_bases
CTTAAAGGTATTTTTTATTATTTATGGGGAAAATACCTTAGTGAATAAAGCTGCTCAAAGAGTGAATAGTAGTAAAAATA
GGTAAGTTACTCGTCGAAAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 456; Mature: 456

Protein sequence:

>456_residues
MLDSTKLDSTKLDSTKYKTKNYLHFDYRVKIENVESYVTDHSKIGNHSFLPLIRYVSSFEKRIEEKNPEFDNRPIKTKDR
VIMYAGHMDNFIYKYYAEVLNKDFYNKFCMEKGIDDCVSAYRNNKVGKSNIDFAAEIINQMVNYKEAYILVGDFTNYFDK
INHELLKKHLAEVLNQPRLSKDWFNVFRSITKYGYYEKSFLNEEYGSDESIKRSNKKSYFENISKFREFQKNNKTLCNKN
KFGIPQGSAISAVFANIYASEFDLKLKEIADEFSGIYRRYSDDFILVIPKSDIVNEQKIRRIETDTRRVASEYKIELHKD
KTGLYLYENDKIFDIISNEVSHLDYLGFVFDGTTVKMRGKSPYKFYRNAKKLITFAQKVKVKKELTDLPYKKKIYGLCTD
LGKNYNNHGNFISYAKRAQKKFDEISPNTNNLIMNQLKNRKKKIEKMLGYKIHTKI

Sequences:

>Translated_456_residues
MLDSTKLDSTKLDSTKYKTKNYLHFDYRVKIENVESYVTDHSKIGNHSFLPLIRYVSSFEKRIEEKNPEFDNRPIKTKDR
VIMYAGHMDNFIYKYYAEVLNKDFYNKFCMEKGIDDCVSAYRNNKVGKSNIDFAAEIINQMVNYKEAYILVGDFTNYFDK
INHELLKKHLAEVLNQPRLSKDWFNVFRSITKYGYYEKSFLNEEYGSDESIKRSNKKSYFENISKFREFQKNNKTLCNKN
KFGIPQGSAISAVFANIYASEFDLKLKEIADEFSGIYRRYSDDFILVIPKSDIVNEQKIRRIETDTRRVASEYKIELHKD
KTGLYLYENDKIFDIISNEVSHLDYLGFVFDGTTVKMRGKSPYKFYRNAKKLITFAQKVKVKKELTDLPYKKKIYGLCTD
LGKNYNNHGNFISYAKRAQKKFDEISPNTNNLIMNQLKNRKKKIEKMLGYKIHTKI
>Mature_456_residues
MLDSTKLDSTKLDSTKYKTKNYLHFDYRVKIENVESYVTDHSKIGNHSFLPLIRYVSSFEKRIEEKNPEFDNRPIKTKDR
VIMYAGHMDNFIYKYYAEVLNKDFYNKFCMEKGIDDCVSAYRNNKVGKSNIDFAAEIINQMVNYKEAYILVGDFTNYFDK
INHELLKKHLAEVLNQPRLSKDWFNVFRSITKYGYYEKSFLNEEYGSDESIKRSNKKSYFENISKFREFQKNNKTLCNKN
KFGIPQGSAISAVFANIYASEFDLKLKEIADEFSGIYRRYSDDFILVIPKSDIVNEQKIRRIETDTRRVASEYKIELHKD
KTGLYLYENDKIFDIISNEVSHLDYLGFVFDGTTVKMRGKSPYKFYRNAKKLITFAQKVKVKKELTDLPYKKKIYGLCTD
LGKNYNNHGNFISYAKRAQKKFDEISPNTNNLIMNQLKNRKKKIEKMLGYKIHTKI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 53962; Mature: 53962

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDSTKLDSTKLDSTKYKTKNYLHFDYRVKIENVESYVTDHSKIGNHSFLPLIRYVSSFE
CCCCCCCCCCCCCCCHHCCCCEEEEEEEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHH
KRIEEKNPEFDNRPIKTKDRVIMYAGHMDNFIYKYYAEVLNKDFYNKFCMEKGIDDCVSA
HHHHHCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
YRNNKVGKSNIDFAAEIINQMVNYKEAYILVGDFTNYFDKINHELLKKHLAEVLNQPRLS
HHCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCC
KDWFNVFRSITKYGYYEKSFLNEEYGSDESIKRSNKKSYFENISKFREFQKNNKTLCNKN
HHHHHHHHHHHHCCCHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
KFGIPQGSAISAVFANIYASEFDLKLKEIADEFSGIYRRYSDDFILVIPKSDIVNEQKIR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHCCHHHHH
RIETDTRRVASEYKIELHKDKTGLYLYENDKIFDIISNEVSHLDYLGFVFDGTTVKMRGK
HHHHHHHHHHHHHHEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHEEECCCEEEECCC
SPYKFYRNAKKLITFAQKVKVKKELTDLPYKKKIYGLCTDLGKNYNNHGNFISYAKRAQK
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
KFDEISPNTNNLIMNQLKNRKKKIEKMLGYKIHTKI
HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCC
>Mature Secondary Structure
MLDSTKLDSTKLDSTKYKTKNYLHFDYRVKIENVESYVTDHSKIGNHSFLPLIRYVSSFE
CCCCCCCCCCCCCCCHHCCCCEEEEEEEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHH
KRIEEKNPEFDNRPIKTKDRVIMYAGHMDNFIYKYYAEVLNKDFYNKFCMEKGIDDCVSA
HHHHHCCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
YRNNKVGKSNIDFAAEIINQMVNYKEAYILVGDFTNYFDKINHELLKKHLAEVLNQPRLS
HHCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCCC
KDWFNVFRSITKYGYYEKSFLNEEYGSDESIKRSNKKSYFENISKFREFQKNNKTLCNKN
HHHHHHHHHHHHCCCHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
KFGIPQGSAISAVFANIYASEFDLKLKEIADEFSGIYRRYSDDFILVIPKSDIVNEQKIR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHCCHHHHH
RIETDTRRVASEYKIELHKDKTGLYLYENDKIFDIISNEVSHLDYLGFVFDGTTVKMRGK
HHHHHHHHHHHHHHEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHHEEECCCEEEECCC
SPYKFYRNAKKLITFAQKVKVKKELTDLPYKKKIYGLCTDLGKNYNNHGNFISYAKRAQK
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
KFDEISPNTNNLIMNQLKNRKKKIEKMLGYKIHTKI
HHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA