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The map label for this gene is yhaM [H]

Identifier: 226224828

GI number: 226224828

Start: 2313697

End: 2314638

Strand: Reverse

Name: yhaM [H]

Synonym: Lm4b_02247

Alternate gene names: 226224828

Gene position: 2314638-2313697 (Counterclockwise)

Preceding gene: 226224829

Following gene: 226224823

Centisome position: 79.47

GC content: 37.26

Gene sequence:

>942_bases
ATGGAAAAAAGATTATTAGACTTTGAAGTTGGGGAAACAGTAGACTTATTCTTGCTAATTAAATCAAGCGTAAAAGGAAC
GGCTAGCAACGGAAAGCCCTTCTTGAGCCTTGTCTTGCAAGATAAATCAGGTGAATTAGAGGCAAAACTATGGGATGTTA
AAGAAAGTGATGAAGCGAATTACGGGGTACAACAAATAGTTCATCTTATGGGTGATATTCAAAATTATCGTGGGCGAAAA
CAATTGAAAATCCGCCAAATTAGACAAGCTACAGCACTGGACGGTGTTAGTGCTAGTGAATTCATGGAAACCGCGCCAAT
TAATAAAGAAGAAATGGCTGATGAAATCACACAATATATTTTCGAAATGAAAAATGCGAATTTGCAACGAATTACGCGCG
CATTGCTTAAAAAATATCAAGATGATTTTTATGATTATCCGGCGGCAATGCGTCATCATCATGAATTTGTTTCCGGCTTG
AGTTTTCATGTAGTTTCGATGTTACGACTTGCAAAATCAGTTGCCGATCTTTACCCATCTGTTAACCGAGATTTATTATA
CGCAGGTGTGATTTTACATGATTTAGGAAAAGTCATTGAGCTTTCAGGCCCTGTATCAACGACGTATACACTAGAAGGTA
ATTTAATTGGCCATATTTCTATCGTAGTAGAAGAAGTGAGCAAAATTGCGGACGAACTTTCGATTGATGGTGAAGAAGTC
GTAGTTTTAAAACACGTTCTTCTATCTCATCATGGTAAAGGTGAGTGGGGGAGTCCAAAACCACCGCTTGTTCGAGAAGC
CGAGATTTTACACCAAATTGATTTAATGGATGCTTCCTTGAACATGATGGATAAAGTACTAAAACATACAAAACCTGGTG
AATTCAGTGAACGAGTATTTGGGTTAGATAATCGTTCGTTTTATAATCCTATATTTGAATAA

Upstream 100 bases:

>100_bases
CATGCCATCAAGAAACTCGCAAATATTTTTCCAGTGAGGACATACGCGTGCTATAATGGGTGAAGAAACTTCTTACTACA
GAAAGAAAGAAGGCGATATA

Downstream 100 bases:

>100_bases
AAAACACGCTTGGAAATTTCCAAGCGTGTTTTTTAGTGCTTATTTAGATGAGTCGCTTTCACTGGATGAAGAGCCATCAA
AATCTTTAAAAGCATCTTTC

Product: 3'-5' exoribonuclease YhaM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MEKRLLDFEVGETVDLFLLIKSSVKGTASNGKPFLSLVLQDKSGELEAKLWDVKESDEANYGVQQIVHLMGDIQNYRGRK
QLKIRQIRQATALDGVSASEFMETAPINKEEMADEITQYIFEMKNANLQRITRALLKKYQDDFYDYPAAMRHHHEFVSGL
SFHVVSMLRLAKSVADLYPSVNRDLLYAGVILHDLGKVIELSGPVSTTYTLEGNLIGHISIVVEEVSKIADELSIDGEEV
VVLKHVLLSHHGKGEWGSPKPPLVREAEILHQIDLMDASLNMMDKVLKHTKPGEFSERVFGLDNRSFYNPIFE

Sequences:

>Translated_313_residues
MEKRLLDFEVGETVDLFLLIKSSVKGTASNGKPFLSLVLQDKSGELEAKLWDVKESDEANYGVQQIVHLMGDIQNYRGRK
QLKIRQIRQATALDGVSASEFMETAPINKEEMADEITQYIFEMKNANLQRITRALLKKYQDDFYDYPAAMRHHHEFVSGL
SFHVVSMLRLAKSVADLYPSVNRDLLYAGVILHDLGKVIELSGPVSTTYTLEGNLIGHISIVVEEVSKIADELSIDGEEV
VVLKHVLLSHHGKGEWGSPKPPLVREAEILHQIDLMDASLNMMDKVLKHTKPGEFSERVFGLDNRSFYNPIFE
>Mature_313_residues
MEKRLLDFEVGETVDLFLLIKSSVKGTASNGKPFLSLVLQDKSGELEAKLWDVKESDEANYGVQQIVHLMGDIQNYRGRK
QLKIRQIRQATALDGVSASEFMETAPINKEEMADEITQYIFEMKNANLQRITRALLKKYQDDFYDYPAAMRHHHEFVSGL
SFHVVSMLRLAKSVADLYPSVNRDLLYAGVILHDLGKVIELSGPVSTTYTLEGNLIGHISIVVEEVSKIADELSIDGEEV
VVLKHVLLSHHGKGEWGSPKPPLVREAEILHQIDLMDASLNMMDKVLKHTKPGEFSERVFGLDNRSFYNPIFE

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OB DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 35369; Mature: 35369

Theoretical pI: Translated: 5.58; Mature: 5.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKRLLDFEVGETVDLFLLIKSSVKGTASNGKPFLSLVLQDKSGELEAKLWDVKESDEAN
CCCCEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCC
YGVQQIVHLMGDIQNYRGRKQLKIRQIRQATALDGVSASEFMETAPINKEEMADEITQYI
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHH
FEMKNANLQRITRALLKKYQDDFYDYPAAMRHHHEFVSGLSFHVVSMLRLAKSVADLYPS
HHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VNRDLLYAGVILHDLGKVIELSGPVSTTYTLEGNLIGHISIVVEEVSKIADELSIDGEEV
CCHHHHHHHHHHHHHHHHEECCCCCCEEEEECCCEEHHHHHHHHHHHHHHHHHCCCCCHH
VVLKHVLLSHHGKGEWGSPKPPLVREAEILHQIDLMDASLNMMDKVLKHTKPGEFSERVF
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
GLDNRSFYNPIFE
CCCCCCCCCCCCC
>Mature Secondary Structure
MEKRLLDFEVGETVDLFLLIKSSVKGTASNGKPFLSLVLQDKSGELEAKLWDVKESDEAN
CCCCEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCCCCC
YGVQQIVHLMGDIQNYRGRKQLKIRQIRQATALDGVSASEFMETAPINKEEMADEITQYI
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHH
FEMKNANLQRITRALLKKYQDDFYDYPAAMRHHHEFVSGLSFHVVSMLRLAKSVADLYPS
HHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
VNRDLLYAGVILHDLGKVIELSGPVSTTYTLEGNLIGHISIVVEEVSKIADELSIDGEEV
CCHHHHHHHHHHHHHHHHEECCCCCCEEEEECCCEEHHHHHHHHHHHHHHHHHCCCCCHH
VVLKHVLLSHHGKGEWGSPKPPLVREAEILHQIDLMDASLNMMDKVLKHTKPGEFSERVF
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
GLDNRSFYNPIFE
CCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]