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The map label for this gene is cspD [H]

Identifier: 226224482

GI number: 226224482

Start: 1941376

End: 1941576

Strand: Direct

Name: cspD [H]

Synonym: Lm4b_01895

Alternate gene names: 226224482

Gene position: 1941376-1941576 (Clockwise)

Preceding gene: 226224470

Following gene: 226224483

Centisome position: 66.65

GC content: 41.79

Gene sequence:

>201_bases
ATGCAAAATGGGAAAGTAAAATGGTTTAACAATGAAAAGGGTTACGGTTTTATCGAATCAGACGGCGGCGAAGATATTTT
CGTTCACTTCACAGCGATCCAAGGTGATGGCTACAAATCTTTAGAAGAAGGCCAAGCGGTAACATTTGAAGTAGTAGAAG
GTAATCGCGGCGCTCAAGCAGCCAATGTAGAAAAAGCCTAA

Upstream 100 bases:

>100_bases
GAAAAGGTAGTATTTGCGAGAAATTTTTTTAAGTTAAAATGAAAGCGTTTTAACAAATGATTCTAGCAATTATTAGCCAT
ACTTAGGAGGATTTATTTCA

Downstream 100 bases:

>100_bases
TCCAGTTGCCAAATAGACACGGACTTAAAACCGGTATCCTTTTACCGGTTTTTTTATTGCAAAAAAATAGCTTTCCTTCT
ATAATAAAGCCACATCTATT

Product: cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 66; Mature: 66

Protein sequence:

>66_residues
MQNGKVKWFNNEKGYGFIESDGGEDIFVHFTAIQGDGYKSLEEGQAVTFEVVEGNRGAQAANVEKA

Sequences:

>Translated_66_residues
MQNGKVKWFNNEKGYGFIESDGGEDIFVHFTAIQGDGYKSLEEGQAVTFEVVEGNRGAQAANVEKA
>Mature_66_residues
MQNGKVKWFNNEKGYGFIESDGGEDIFVHFTAIQGDGYKSLEEGQAVTFEVVEGNRGAQAANVEKA

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586882, Length=65, Percent_Identity=52.3076923076923, Blast_Score=63, Evalue=5e-11,
Organism=Homo sapiens, GI34098946, Length=65, Percent_Identity=52.3076923076923, Blast_Score=63, Evalue=6e-11,
Organism=Homo sapiens, GI224586884, Length=65, Percent_Identity=52.3076923076923, Blast_Score=62, Evalue=7e-11,
Organism=Homo sapiens, GI156415990, Length=65, Percent_Identity=50.7692307692308, Blast_Score=62, Evalue=7e-11,
Organism=Escherichia coli, GI1789979, Length=63, Percent_Identity=58.7301587301587, Blast_Score=79, Evalue=7e-17,
Organism=Escherichia coli, GI1788126, Length=61, Percent_Identity=59.0163934426229, Blast_Score=78, Evalue=1e-16,
Organism=Escherichia coli, GI1786841, Length=61, Percent_Identity=59.0163934426229, Blast_Score=77, Evalue=2e-16,
Organism=Escherichia coli, GI1787839, Length=63, Percent_Identity=57.1428571428571, Blast_Score=77, Evalue=2e-16,
Organism=Escherichia coli, GI1787107, Length=64, Percent_Identity=53.125, Blast_Score=75, Evalue=1e-15,
Organism=Escherichia coli, GI2367114, Length=61, Percent_Identity=55.7377049180328, Blast_Score=73, Evalue=3e-15,
Organism=Escherichia coli, GI1787834, Length=63, Percent_Identity=50.7936507936508, Blast_Score=67, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7214; Mature: 7214

Theoretical pI: Translated: 4.32; Mature: 4.32

Prosite motif: PS00352 COLD_SHOCK ; PS00153 ATPASE_GAMMA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNGKVKWFNNEKGYGFIESDGGEDIFVHFTAIQGDGYKSLEEGQAVTFEVVEGNRGAQA
CCCCCEEEEECCCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCC
ANVEKA
CCCCCC
>Mature Secondary Structure
MQNGKVKWFNNEKGYGFIESDGGEDIFVHFTAIQGDGYKSLEEGQAVTFEVVEGNRGAQA
CCCCCEEEEECCCCCEEEECCCCCEEEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCC
ANVEKA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377; 3098734; 8755892 [H]