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The map label for this gene is 226224290

Identifier: 226224290

GI number: 226224290

Start: 1738821

End: 1739348

Strand: Reverse

Name: 226224290

Synonym: Lm4b_01701

Alternate gene names: NA

Gene position: 1739348-1738821 (Counterclockwise)

Preceding gene: 226224291

Following gene: 226224287

Centisome position: 59.72

GC content: 39.39

Gene sequence:

>528_bases
ATGTACTTACCCAAAGAGAAAGAAATAATACAAATCAAGAGCTACAAACATAACGGAAAACTTCATCGTACTTGGAAAAA
GACAGTGGTGCTTAAATCTACGGAGAATATTATTATCGGCGGAAACGACCACACATTAGTTGTGGAAGCAGACGGACGTA
AATGGGTAACGCGCGAACCATCTATCTGCTATTTTCATAGTGATTACTGGTTTAATGTAATTTCCATGATTAGAGAAGAC
GGCATTTATCATTACTGCAATCTAGGGACACCATTTGCAGTAGATGAACAAGCGCTTAAGTACATTGACTATGACCTCGA
TATTAAGGTTTTCCCAGATGGAAGGTTTCATTTGCTTGATGAGGGCGAATACGAACAACACCGTCGCCAAATGAAGTACC
CAGACTCAATTGACCGGATACTTCGACATAATGTGGATGTGTTAAGCCACTGGATTTTGGACAAAAAAGGTCCGTTTTCC
CCTGACTACATTGACATTTGGTATGAAAAGTACAAAGAATACCGTTAA

Upstream 100 bases:

>100_bases
GGAAAATATTCCGTTTCAGCACGATATTGTTTTTTTGCAGTCTTGCCTTATGTTATAATAATAATGATTTTGATAGTACA
TGAGGAAAGTAGGATAAAGG

Downstream 100 bases:

>100_bases
AAAAACGAGCTTTGGAGTCTATCTCCAAGCTCGTTTTTTGTTTATTCTTCATTGACATTAATATCAATTTGGTTTTCTTT
CGTGTGTCTGAGTTTAAAAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MYLPKEKEIIQIKSYKHNGKLHRTWKKTVVLKSTENIIIGGNDHTLVVEADGRKWVTREPSICYFHSDYWFNVISMIRED
GIYHYCNLGTPFAVDEQALKYIDYDLDIKVFPDGRFHLLDEGEYEQHRRQMKYPDSIDRILRHNVDVLSHWILDKKGPFS
PDYIDIWYEKYKEYR

Sequences:

>Translated_175_residues
MYLPKEKEIIQIKSYKHNGKLHRTWKKTVVLKSTENIIIGGNDHTLVVEADGRKWVTREPSICYFHSDYWFNVISMIRED
GIYHYCNLGTPFAVDEQALKYIDYDLDIKVFPDGRFHLLDEGEYEQHRRQMKYPDSIDRILRHNVDVLSHWILDKKGPFS
PDYIDIWYEKYKEYR
>Mature_175_residues
MYLPKEKEIIQIKSYKHNGKLHRTWKKTVVLKSTENIIIGGNDHTLVVEADGRKWVTREPSICYFHSDYWFNVISMIRED
GIYHYCNLGTPFAVDEQALKYIDYDLDIKVFPDGRFHLLDEGEYEQHRRQMKYPDSIDRILRHNVDVLSHWILDKKGPFS
PDYIDIWYEKYKEYR

Specific function: Unknown

COG id: COG3557

COG function: function code J; Uncharacterized domain/protein associated with RNAses G and E

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0374 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1687_LISMO (Q8Y6J7)

Other databases:

- EMBL:   AL591980
- PIR:   AG1285
- RefSeq:   NP_465212.1
- ProteinModelPortal:   Q8Y6J7
- GeneID:   985631
- GenomeReviews:   AL591824_GR
- KEGG:   lmo:lmo1687
- GenoList:   LMO1687
- HOGENOM:   HBG288296
- OMA:   RTWVTRE
- ProtClustDB:   PRK13662
- BioCyc:   LMON169963:LMO1687-MONOMER
- HAMAP:   MF_01568
- InterPro:   IPR007295
- InterPro:   IPR016882
- PIRSF:   PIRSF028345

Pfam domain/function: PF04167 DUF402

EC number: NA

Molecular weight: Translated: 21134; Mature: 21134

Theoretical pI: Translated: 7.02; Mature: 7.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLPKEKEIIQIKSYKHNGKLHRTWKKTVVLKSTENIIIGGNDHTLVVEADGRKWVTREP
CCCCCCCCEEEEEEECCCCCEEEEEEEEEEEECCCEEEECCCCCEEEEEECCCEEECCCC
SICYFHSDYWFNVISMIREDGIYHYCNLGTPFAVDEQALKYIDYDLDIKVFPDGRFHLLD
CEEEEECHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHCCCCCEEEECCCCCEEEEC
EGEYEQHRRQMKYPDSIDRILRHNVDVLSHWILDKKGPFSPDYIDIWYEKYKEYR
CCCHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MYLPKEKEIIQIKSYKHNGKLHRTWKKTVVLKSTENIIIGGNDHTLVVEADGRKWVTREP
CCCCCCCCEEEEEEECCCCCEEEEEEEEEEEECCCEEEECCCCCEEEEEECCCEEECCCC
SICYFHSDYWFNVISMIREDGIYHYCNLGTPFAVDEQALKYIDYDLDIKVFPDGRFHLLD
CEEEEECHHHHHHHHHHHHCCCEEEECCCCCCCCCHHHHHHCCCCCEEEECCCCCEEEEC
EGEYEQHRRQMKYPDSIDRILRHNVDVLSHWILDKKGPFSPDYIDIWYEKYKEYR
CCCHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669