Click here to switch to the map view.

The map label for this gene is ytoP [H]

Identifier: 226224212

GI number: 226224212

Start: 1638612

End: 1639685

Strand: Reverse

Name: ytoP [H]

Synonym: Lm4b_01622

Alternate gene names: 226224212

Gene position: 1639685-1638612 (Counterclockwise)

Preceding gene: 226224214

Following gene: 226224211

Centisome position: 56.29

GC content: 43.3

Gene sequence:

>1074_bases
ATGGAAAAAGAAACGTTAGCGATGTTTAAAGAATTAACGGAACTTCAAGGGACTTCGGGTGATGAACATAGAATTCGTGC
TTTTATGCGAAAAGAACTTGAACCGGTTTCCGATGAAATTATCCAAGACGGCTTAGGTGGTATTTTTGGTGTGCGCCACG
GAGCGGAAGGTGGTCCACGCGTCCTCGTTGCGGCTCATATGGATGAAGTTGGCTTTATGGTAACGCAAATTACAGAAAAT
GGTCTAATACGTTTTCAAACAATTGGTGGTTGGAATCCGCAAGTTTTACAGGCACAGCGAGTGCAAATTATGGCGCCTAA
CGGTCCGGTTATTGGGGTAGTTGCTTCTGTTCCACCGCATTTGTTGTCGGAGGCTGAACGTAGCAAACCAACGGATCCTA
AAAACTTACTAATTGATATTGGTGCGGATGATAAAGCGGACGCGGAGAAAATTGGTATCAAACCAGGGCAATTCATTGTT
CCTGTGGCTGAATTCACGCCGCTTGCGAATCCAAAGAAAATTTTAGCGAAAGCATGGGATAATCGTTATGGCGTTGGTCT
TGCGATTGAACTTATGAAAGAATTGAAAGGCGAATCGTTGCCAAATACACTTTTTGCTGGGGCGAATGTGCAAGAAGAAG
TCGGTCTGCGCGGTGCGGGCGTAAGTGCGAACATGATTAAACCAGATTTATTCTTCGCGTTAGATGCTAGCCCTGCAAAT
GATACGACTGGGAATAAATCGCAATTCGGTCAAATTGGTCAAGGTTTCTTACTGCGTATTTTTGACCGGACGATGATTAT
GCATCGAGGTATGCGTGAATTTTTATTAGATACTGCGGAAACCAATAAAATTCCTTATCAATATTTTGTTTCGCCAGGAG
GAACGGATGCTGGGAAAGTGCATACATCGCTTAGCGGGATTCCGAGTGCAGTAATTGGTGTTCCAGCTAGATACATTCAC
TCGTCTAACTCGATTTTACATGTGGATGACTATGCTGCTGCAAAAGAAATGATTACAACGCTTATTCGCAGTTTGGATAA
AACGACCTACGAAACAATTAAAAACAATGCGTGA

Upstream 100 bases:

>100_bases
TTTTGAACACGCTTTCTGTAAAAGAGAGAAGTGAAGCGAGCGGAAACGGATATTATTTGCTATAATAAAAGAGATTTTAG
ACGGAAAGAGATGATTATTA

Downstream 100 bases:

>100_bases
AATAATAAAGAAACCAGTAATTGTTGTGGGGTTGTTCCTTTTGGTGGCGAGTTTAGTATTCTTGCTAGGCTATGTTACGG
ACCTGCCTTATTTTCGTGAT

Product: aminopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 357

Protein sequence:

>357_residues
MEKETLAMFKELTELQGTSGDEHRIRAFMRKELEPVSDEIIQDGLGGIFGVRHGAEGGPRVLVAAHMDEVGFMVTQITEN
GLIRFQTIGGWNPQVLQAQRVQIMAPNGPVIGVVASVPPHLLSEAERSKPTDPKNLLIDIGADDKADAEKIGIKPGQFIV
PVAEFTPLANPKKILAKAWDNRYGVGLAIELMKELKGESLPNTLFAGANVQEEVGLRGAGVSANMIKPDLFFALDASPAN
DTTGNKSQFGQIGQGFLLRIFDRTMIMHRGMREFLLDTAETNKIPYQYFVSPGGTDAGKVHTSLSGIPSAVIGVPARYIH
SSNSILHVDDYAAAKEMITTLIRSLDKTTYETIKNNA

Sequences:

>Translated_357_residues
MEKETLAMFKELTELQGTSGDEHRIRAFMRKELEPVSDEIIQDGLGGIFGVRHGAEGGPRVLVAAHMDEVGFMVTQITEN
GLIRFQTIGGWNPQVLQAQRVQIMAPNGPVIGVVASVPPHLLSEAERSKPTDPKNLLIDIGADDKADAEKIGIKPGQFIV
PVAEFTPLANPKKILAKAWDNRYGVGLAIELMKELKGESLPNTLFAGANVQEEVGLRGAGVSANMIKPDLFFALDASPAN
DTTGNKSQFGQIGQGFLLRIFDRTMIMHRGMREFLLDTAETNKIPYQYFVSPGGTDAGKVHTSLSGIPSAVIGVPARYIH
SSNSILHVDDYAAAKEMITTLIRSLDKTTYETIKNNA
>Mature_357_residues
MEKETLAMFKELTELQGTSGDEHRIRAFMRKELEPVSDEIIQDGLGGIFGVRHGAEGGPRVLVAAHMDEVGFMVTQITEN
GLIRFQTIGGWNPQVLQAQRVQIMAPNGPVIGVVASVPPHLLSEAERSKPTDPKNLLIDIGADDKADAEKIGIKPGQFIV
PVAEFTPLANPKKILAKAWDNRYGVGLAIELMKELKGESLPNTLFAGANVQEEVGLRGAGVSANMIKPDLFFALDASPAN
DTTGNKSQFGQIGQGFLLRIFDRTMIMHRGMREFLLDTAETNKIPYQYFVSPGGTDAGKVHTSLSGIPSAVIGVPARYIH
SSNSILHVDDYAAAKEMITTLIRSLDKTTYETIKNNA

Specific function: Unknown

COG id: COG1363

COG function: function code G; Cellulase M and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M42 family [H]

Homologues:

Organism=Escherichia coli, GI1790332, Length=356, Percent_Identity=38.4831460674157, Blast_Score=220, Evalue=1e-58,
Organism=Escherichia coli, GI1788727, Length=346, Percent_Identity=30.635838150289, Blast_Score=157, Evalue=8e-40,
Organism=Escherichia coli, GI87082417, Length=345, Percent_Identity=30.4347826086957, Blast_Score=142, Evalue=3e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008007 [H]

Pfam domain/function: PF05343 Peptidase_M42 [H]

EC number: NA

Molecular weight: Translated: 38763; Mature: 38763

Theoretical pI: Translated: 5.89; Mature: 5.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEKETLAMFKELTELQGTSGDEHRIRAFMRKELEPVSDEIIQDGLGGIFGVRHGAEGGPR
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHCCCCCCCCE
VLVAAHMDEVGFMVTQITENGLIRFQTIGGWNPQVLQAQRVQIMAPNGPVIGVVASVPPH
EEEEECCCHHHHEEEEECCCCEEEEEEECCCCHHHEEECCEEEECCCCCEEEEECCCCHH
LLSEAERSKPTDPKNLLIDIGADDKADAEKIGIKPGQFIVPVAEFTPLANPKKILAKAWD
HHHHHHHCCCCCCCCEEEECCCCCCCCHHHHCCCCCCEEEEHHHHCCCCCHHHHHHHHHC
NRYGVGLAIELMKELKGESLPNTLFAGANVQEEVGLRGAGVSANMIKPDLFFALDASPAN
CCCCCHHHHHHHHHHCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCCEEEEEECCCCC
DTTGNKSQFGQIGQGFLLRIFDRTMIMHRGMREFLLDTAETNKIPYQYFVSPGGTDAGKV
CCCCCHHHHHHHCHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCEEEEECCCCCCCCHH
HTSLSGIPSAVIGVPARYIHSSNSILHVDDYAAAKEMITTLIRSLDKTTYETIKNNA
HHHHHCCCHHHHHCCHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEKETLAMFKELTELQGTSGDEHRIRAFMRKELEPVSDEIIQDGLGGIFGVRHGAEGGPR
CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHCCCHHHHHCCCCCCCCE
VLVAAHMDEVGFMVTQITENGLIRFQTIGGWNPQVLQAQRVQIMAPNGPVIGVVASVPPH
EEEEECCCHHHHEEEEECCCCEEEEEEECCCCHHHEEECCEEEECCCCCEEEEECCCCHH
LLSEAERSKPTDPKNLLIDIGADDKADAEKIGIKPGQFIVPVAEFTPLANPKKILAKAWD
HHHHHHHCCCCCCCCEEEECCCCCCCCHHHHCCCCCCEEEEHHHHCCCCCHHHHHHHHHC
NRYGVGLAIELMKELKGESLPNTLFAGANVQEEVGLRGAGVSANMIKPDLFFALDASPAN
CCCCCHHHHHHHHHHCCCCCCCCEEECCCCHHHHCCCCCCCCCCCCCCCEEEEEECCCCC
DTTGNKSQFGQIGQGFLLRIFDRTMIMHRGMREFLLDTAETNKIPYQYFVSPGGTDAGKV
CCCCCHHHHHHHCHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCEEEEECCCCCCCCHH
HTSLSGIPSAVIGVPARYIHSSNSILHVDDYAAAKEMITTLIRSLDKTTYETIKNNA
HHHHHCCCHHHHHCCHHHHCCCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]