Click here to switch to the map view.

The map label for this gene is yrrB [H]

Identifier: 226224111

GI number: 226224111

Start: 1526099

End: 1526767

Strand: Reverse

Name: yrrB [H]

Synonym: Lm4b_01520

Alternate gene names: 226224111

Gene position: 1526767-1526099 (Counterclockwise)

Preceding gene: 226224112

Following gene: 226224110

Centisome position: 52.42

GC content: 36.02

Gene sequence:

>669_bases
ATGGATAAAAATCAATTAGGTATTAAACAAATGCAAGAAGGAAATTTAGAAGAAGCAGTCAAGTTATTTACAGAAGTAAT
TGAAGAACATCCAAGTGATCCAGTTGGTTATATTAATTTTGGAAATGTTTTACTTTCAATGGATGATTTTGAACGTGCGG
AATTATTTTTCAAAAGAGCACTAGAGCTAGATGACACAGTTCCAGCTGCTTACTATAGCTTAGGAAATTTATATTATGAA
TTAGAGCGTTATCAAGAAGCGGCAGATAGCTTCCAAAATGCCACAAAACAAGGAATGGAAAATGGTGATTTATTTTTCAT
GTTAGGAATGAGTTTTGTTCAAATGGAGGAGCTAACACTTGCGATGCCATATTTACTTAGAAGTGTCGAATTAAACCCAG
AAGACGGCGAAGCGTTATTCCAATATGGGATTGTGCTTGCTCGCAGTGGTTTTTATGAAGATGCGATTAATATGTTAGAA
CGCGTTTTACTTGTTAAGCCTGAAGATCCAGATGCACTTTACAATATTGGTGCAGCTTATCTGGCGTGGCAAGGAGATAT
CGTTCTTGCTAAAAACTATTTTGAACGAGCGATTGCTACAGGTGCTTCACATGAATTGGCTGAAAACGCCTTAAATGCAA
TTCAAGATTTAGAGAACGAAGTAGAGTAA

Upstream 100 bases:

>100_bases
GCAACGATTAGTGGACCAGAACAAACTGATCAAGTAGCGAATGCGCTCATTACGTGGCTTAATACATCTGTAAAAAATCA
GGAAAGATAAGAGGGATAAC

Downstream 100 bases:

>100_bases
AACGAATTAGAAAGGAGGCGGCTTAGGATGGCTGAACAAGAATCACTCGCTCTATTTAACGATACACCAGAAGAACTTTT
CATGAAGGGCACGATGTTGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MDKNQLGIKQMQEGNLEEAVKLFTEVIEEHPSDPVGYINFGNVLLSMDDFERAELFFKRALELDDTVPAAYYSLGNLYYE
LERYQEAADSFQNATKQGMENGDLFFMLGMSFVQMEELTLAMPYLLRSVELNPEDGEALFQYGIVLARSGFYEDAINMLE
RVLLVKPEDPDALYNIGAAYLAWQGDIVLAKNYFERAIATGASHELAENALNAIQDLENEVE

Sequences:

>Translated_222_residues
MDKNQLGIKQMQEGNLEEAVKLFTEVIEEHPSDPVGYINFGNVLLSMDDFERAELFFKRALELDDTVPAAYYSLGNLYYE
LERYQEAADSFQNATKQGMENGDLFFMLGMSFVQMEELTLAMPYLLRSVELNPEDGEALFQYGIVLARSGFYEDAINMLE
RVLLVKPEDPDALYNIGAAYLAWQGDIVLAKNYFERAIATGASHELAENALNAIQDLENEVE
>Mature_222_residues
MDKNQLGIKQMQEGNLEEAVKLFTEVIEEHPSDPVGYINFGNVLLSMDDFERAELFFKRALELDDTVPAAYYSLGNLYYE
LERYQEAADSFQNATKQGMENGDLFFMLGMSFVQMEELTLAMPYLLRSVELNPEDGEALFQYGIVLARSGFYEDAINMLE
RVLLVKPEDPDALYNIGAAYLAWQGDIVLAKNYFERAIATGASHELAENALNAIQDLENEVE

Specific function: Could be an interacting mediator in the complex formation among RNA sulfuration components, RNA processing components, and aminoacyl-tRNA synthetases [H]

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 6 TPR repeats [H]

Homologues:

Organism=Homo sapiens, GI118766330, Length=192, Percent_Identity=26.5625, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI118766328, Length=192, Percent_Identity=26.5625, Blast_Score=73, Evalue=2e-13,
Organism=Homo sapiens, GI301336134, Length=194, Percent_Identity=22.680412371134, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI24647123, Length=223, Percent_Identity=24.6636771300448, Blast_Score=67, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24659892, Length=181, Percent_Identity=25.414364640884, Blast_Score=64, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 25156; Mature: 25156

Theoretical pI: Translated: 3.85; Mature: 3.85

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKNQLGIKQMQEGNLEEAVKLFTEVIEEHPSDPVGYINFGNVLLSMDDFERAELFFKRA
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCHHHHHHHHHHHH
LELDDTVPAAYYSLGNLYYELERYQEAADSFQNATKQGMENGDLFFMLGMSFVQMEELTL
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHH
AMPYLLRSVELNPEDGEALFQYGIVLARSGFYEDAINMLERVLLVKPEDPDALYNIGAAY
HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
LAWQGDIVLAKNYFERAIATGASHELAENALNAIQDLENEVE
EEECCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MDKNQLGIKQMQEGNLEEAVKLFTEVIEEHPSDPVGYINFGNVLLSMDDFERAELFFKRA
CCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCCEEECCCEEEECCHHHHHHHHHHHH
LELDDTVPAAYYSLGNLYYELERYQEAADSFQNATKQGMENGDLFFMLGMSFVQMEELTL
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHHHHH
AMPYLLRSVELNPEDGEALFQYGIVLARSGFYEDAINMLERVLLVKPEDPDALYNIGAAY
HHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
LAWQGDIVLAKNYFERAIATGASHELAENALNAIQDLENEVE
EEECCCEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]