Click here to switch to the map view.

The map label for this gene is 226224009

Identifier: 226224009

GI number: 226224009

Start: 1422434

End: 1422964

Strand: Reverse

Name: 226224009

Synonym: Lm4b_01417

Alternate gene names: NA

Gene position: 1422964-1422434 (Counterclockwise)

Preceding gene: 226224014

Following gene: 226223988

Centisome position: 48.85

GC content: 33.71

Gene sequence:

>531_bases
ATGATACCAAATGTCTTAGAATATACGTTATTACAAATGATTGCTCGTGAAGCATCTAGTGGTTATGAACTCGCAAACAG
GCTTCGAATTATGCAAAATACACATCATAGCCAAATTTATCCTTCTTTATCTAAGTTAGAAAAAGCAGGTTTTTTAGTTG
TCCATAAGCATTCCCAAGATAAAAAGCCTGATAAAAAAGTCTATACTATCACACAAACCGGCTTAGACTCCCTGCTTGAA
TGGTCTGAAACACCACTTAAAATCCCTGTCACACGAGATGAATTTACAACAAAAGTACAGCTTGACTGGCTAAACAATGC
CAGAACCAAAGGGCTTATTCAAGAAAGAGAAAGCTATTTAAAAGAGCAATTAGGTTTAATTGAAGAAACACTGGATCATT
TCGCTAAATTATTTGACCTAAAAACCAAACAAGACAAGCTAAAAAACATGTCTTATCAAGTCTATGCAAGACGATTAGAT
TTGATTCATACCGAATTAAAATGGTGTGAGGAAATGTATAAAATACTATAA

Upstream 100 bases:

>100_bases
TCAATATTTACATATATAATTTATTACATATATAACCATTTTACTTATTAGTGTTTATCGCTTACAATAAGATTAAATAG
AAATTTAGAGGTGCTATTGT

Downstream 100 bases:

>100_bases
AAAAACCGGCGAATACTAAGTTCGCCGGTTTTTACTATTTATAACTACTAGTTTCTAAGATTTTATTGGCAAGTGCTACC
ACTTCTTCTTCTGGCGCCTC

Product: hypothetical protein

Products: NA

Alternate protein names: Transcriptional Regulator; Transcriptional Regulator PadR Family; Transcriptional Regulator PadR-Like Family; Transcriptional Repressor

Number of amino acids: Translated: 176; Mature: 176

Protein sequence:

>176_residues
MIPNVLEYTLLQMIAREASSGYELANRLRIMQNTHHSQIYPSLSKLEKAGFLVVHKHSQDKKPDKKVYTITQTGLDSLLE
WSETPLKIPVTRDEFTTKVQLDWLNNARTKGLIQERESYLKEQLGLIEETLDHFAKLFDLKTKQDKLKNMSYQVYARRLD
LIHTELKWCEEMYKIL

Sequences:

>Translated_176_residues
MIPNVLEYTLLQMIAREASSGYELANRLRIMQNTHHSQIYPSLSKLEKAGFLVVHKHSQDKKPDKKVYTITQTGLDSLLE
WSETPLKIPVTRDEFTTKVQLDWLNNARTKGLIQERESYLKEQLGLIEETLDHFAKLFDLKTKQDKLKNMSYQVYARRLD
LIHTELKWCEEMYKIL
>Mature_176_residues
MIPNVLEYTLLQMIAREASSGYELANRLRIMQNTHHSQIYPSLSKLEKAGFLVVHKHSQDKKPDKKVYTITQTGLDSLLE
WSETPLKIPVTRDEFTTKVQLDWLNNARTKGLIQERESYLKEQLGLIEETLDHFAKLFDLKTKQDKLKNMSYQVYARRLD
LIHTELKWCEEMYKIL

Specific function: Unknown

COG id: COG1695

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20769; Mature: 20769

Theoretical pI: Translated: 8.88; Mature: 8.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPNVLEYTLLQMIAREASSGYELANRLRIMQNTHHSQIYPSLSKLEKAGFLVVHKHSQD
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCC
KKPDKKVYTITQTGLDSLLEWSETPLKIPVTRDEFTTKVQLDWLNNARTKGLIQERESYL
CCCCCCEEEEHHHHHHHHHHCCCCCEEECCCCCHHHHEEEEEECCCCHHHHHHHHHHHHH
KEQLGLIEETLDHFAKLFDLKTKQDKLKNMSYQVYARRLDLIHTELKWCEEMYKIL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MIPNVLEYTLLQMIAREASSGYELANRLRIMQNTHHSQIYPSLSKLEKAGFLVVHKHSQD
CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCEEEEECCCCC
KKPDKKVYTITQTGLDSLLEWSETPLKIPVTRDEFTTKVQLDWLNNARTKGLIQERESYL
CCCCCCEEEEHHHHHHHHHHCCCCCEEECCCCCHHHHEEEEEECCCCHHHHHHHHHHHHH
KEQLGLIEETLDHFAKLFDLKTKQDKLKNMSYQVYARRLDLIHTELKWCEEMYKIL
HHHHHHHHHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA