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The map label for this gene is ymfF [H]

Identifier: 226223993

GI number: 226223993

Start: 1402506

End: 1403798

Strand: Direct

Name: ymfF [H]

Synonym: Lm4b_01401

Alternate gene names: 226223993

Gene position: 1402506-1403798 (Clockwise)

Preceding gene: 226223992

Following gene: 226223994

Centisome position: 48.15

GC content: 33.95

Gene sequence:

>1293_bases
ATGACAGACAAAATATTTCAAGAAAAAGTTGGTCCGGTTGCACTAACAATTGTTCCAACCCAAAAATATAAATCCAATAA
AATTGTTTTCAAATTTCGCGCTCCATTAGAAAGAGAAACAGTAACTAAACGGGCTTTACTTTCAATATTATTAGAAACAA
ATAGTGAAAAATACCCAACTCAAACAGCTTTCAGAAAGCAATTAGCGAATCTTTACGGTGCTAATTTTTATACAACAACA
GCTAAAAAAGGTAATGAACACGTATTAACTGTTATTTTCGATATGATTGATGGGCAATATGTATCGGACGGAATTCATAT
TTTGGAAGATGCTTTTGCTTTTATAGAACAAGCATTATTCCATCCAAATGTGACAAACGGCGCTTTCAATGATGAAACAC
TTGCTCGCGAAAAAGAGAACTTGAAAAGTAGTTTAGAAGGTATTTACGATGACAAAATTCGTTTTGCTTCTAAACGACTA
GTAGAAGAAATGTTCCGCGATGATGAGTTTCGTTTTGGCTCAGCTGGCGTTTTAGAAGACATTGATGCTATCACAGCGAA
AGATTTATATGAATACTACTTACAATTTATTGCAGAAGATGCTATCGAAATATTTATTTGTGGAGATGTAACAAAAGAAG
AAGTATTGCCTCTTATCGAAAAAATGGCTTTTGCGCCACGTGCTGAACGAAAAGGTGTTTTTTATACAAAAGAAGCTCCA
AATGTAGTGCGCACTATTCATGAGCAACAAGCGATTAATCAAGGGAAACTTGTACTTGGTTATCAAACAGAAACCTTATT
CGGAGATGATGATTTCGTTGCACTTCAACTTGCAAATGGGCTTCTTGGCGGATTTGCTAATTCGAAAATCTTTATCAATG
TTCGCGAAAAAGCGAGTCTGGCTTATTATGCTTCAAGCCGAATTGATTCTTTCAAAGGTTATATGATTATTTCAGCTGGA
ATTGATGAAGTAAATTACGAACAAGCCTTAAAAATTATTGAAGAACAAGTAGTAGCAATGAAACAAGGCAATTTTACAGA
AGATGAATTAAACCAAACAAAAGAAATGCTCATTAACCAATTGCTTGAAACAAATGATCAGGCGCAAGGTTTGATAGAAC
TGGTTTACAATAATGTTCTACGTAAAGCAAACTTAGACTTAGAAAATTGGATTGCGAAAATCAAACAAGCAACCAAAGAA
GAAGTAGTTGCTGCTATCAATAAAATTAAACCAGATACCATTTATTTCTTAAGTAAGGGAGGAGAAGAACTTCATGGAAA
AAATCACATTTGA

Upstream 100 bases:

>100_bases
AGATTAAATTCTAGGCTGTTTTTTATGCTAGAAAATTGTGCGTGGCAACAACTTAGGATACAATAGGAAAGTGAGATCAT
TGCTTGAAAGGAGCATTATA

Downstream 100 bases:

>100_bases
GCAAGTAAAAGAAGCAGTCTTTCATGAAAAAATGGCAAATGGCTTACAAGTGTATCTTCTTCCAAAACAAGGTTTTAGTA
AGACTTATGCTGTATTCACA

Product: protease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 429

Protein sequence:

>430_residues
MTDKIFQEKVGPVALTIVPTQKYKSNKIVFKFRAPLERETVTKRALLSILLETNSEKYPTQTAFRKQLANLYGANFYTTT
AKKGNEHVLTVIFDMIDGQYVSDGIHILEDAFAFIEQALFHPNVTNGAFNDETLAREKENLKSSLEGIYDDKIRFASKRL
VEEMFRDDEFRFGSAGVLEDIDAITAKDLYEYYLQFIAEDAIEIFICGDVTKEEVLPLIEKMAFAPRAERKGVFYTKEAP
NVVRTIHEQQAINQGKLVLGYQTETLFGDDDFVALQLANGLLGGFANSKIFINVREKASLAYYASSRIDSFKGYMIISAG
IDEVNYEQALKIIEEQVVAMKQGNFTEDELNQTKEMLINQLLETNDQAQGLIELVYNNVLRKANLDLENWIAKIKQATKE
EVVAAINKIKPDTIYFLSKGGEELHGKNHI

Sequences:

>Translated_430_residues
MTDKIFQEKVGPVALTIVPTQKYKSNKIVFKFRAPLERETVTKRALLSILLETNSEKYPTQTAFRKQLANLYGANFYTTT
AKKGNEHVLTVIFDMIDGQYVSDGIHILEDAFAFIEQALFHPNVTNGAFNDETLAREKENLKSSLEGIYDDKIRFASKRL
VEEMFRDDEFRFGSAGVLEDIDAITAKDLYEYYLQFIAEDAIEIFICGDVTKEEVLPLIEKMAFAPRAERKGVFYTKEAP
NVVRTIHEQQAINQGKLVLGYQTETLFGDDDFVALQLANGLLGGFANSKIFINVREKASLAYYASSRIDSFKGYMIISAG
IDEVNYEQALKIIEEQVVAMKQGNFTEDELNQTKEMLINQLLETNDQAQGLIELVYNNVLRKANLDLENWIAKIKQATKE
EVVAAINKIKPDTIYFLSKGGEELHGKNHI
>Mature_429_residues
TDKIFQEKVGPVALTIVPTQKYKSNKIVFKFRAPLERETVTKRALLSILLETNSEKYPTQTAFRKQLANLYGANFYTTTA
KKGNEHVLTVIFDMIDGQYVSDGIHILEDAFAFIEQALFHPNVTNGAFNDETLAREKENLKSSLEGIYDDKIRFASKRLV
EEMFRDDEFRFGSAGVLEDIDAITAKDLYEYYLQFIAEDAIEIFICGDVTKEEVLPLIEKMAFAPRAERKGVFYTKEAPN
VVRTIHEQQAINQGKLVLGYQTETLFGDDDFVALQLANGLLGGFANSKIFINVREKASLAYYASSRIDSFKGYMIISAGI
DEVNYEQALKIIEEQVVAMKQGNFTEDELNQTKEMLINQLLETNDQAQGLIELVYNNVLRKANLDLENWIAKIKQATKEE
VVAAINKIKPDTIYFLSKGGEELHGKNHI

Specific function: Unknown

COG id: COG0612

COG function: function code R; Predicted Zn-dependent peptidases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M16 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011249
- InterPro:   IPR011237
- InterPro:   IPR007863 [H]

Pfam domain/function: PF05193 Peptidase_M16_C [H]

EC number: NA

Molecular weight: Translated: 48758; Mature: 48627

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDKIFQEKVGPVALTIVPTQKYKSNKIVFKFRAPLERETVTKRALLSILLETNSEKYPT
CCCHHHHHCCCCEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCH
QTAFRKQLANLYGANFYTTTAKKGNEHVLTVIFDMIDGQYVSDGIHILEDAFAFIEQALF
HHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
HPNVTNGAFNDETLAREKENLKSSLEGIYDDKIRFASKRLVEEMFRDDEFRFGSAGVLED
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
IDAITAKDLYEYYLQFIAEDAIEIFICGDVTKEEVLPLIEKMAFAPRAERKGVFYTKEAP
HHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCC
NVVRTIHEQQAINQGKLVLGYQTETLFGDDDFVALQLANGLLGGFANSKIFINVREKASL
HHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEHHHHHHHHHCCCCCCEEEEEECCCCHH
AYYASSRIDSFKGYMIISAGIDEVNYEQALKIIEEQVVAMKQGNFTEDELNQTKEMLINQ
HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LLETNDQAQGLIELVYNNVLRKANLDLENWIAKIKQATKEEVVAAINKIKPDTIYFLSKG
HHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
GEELHGKNHI
CHHCCCCCCC
>Mature Secondary Structure 
TDKIFQEKVGPVALTIVPTQKYKSNKIVFKFRAPLERETVTKRALLSILLETNSEKYPT
CCHHHHHCCCCEEEEEEECCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCH
QTAFRKQLANLYGANFYTTTAKKGNEHVLTVIFDMIDGQYVSDGIHILEDAFAFIEQALF
HHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
HPNVTNGAFNDETLAREKENLKSSLEGIYDDKIRFASKRLVEEMFRDDEFRFGSAGVLED
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
IDAITAKDLYEYYLQFIAEDAIEIFICGDVTKEEVLPLIEKMAFAPRAERKGVFYTKEAP
HHHHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCC
NVVRTIHEQQAINQGKLVLGYQTETLFGDDDFVALQLANGLLGGFANSKIFINVREKASL
HHHHHHHHHHHCCCCCEEEEEEEEEEECCCCEEHHHHHHHHHCCCCCCEEEEEECCCCHH
AYYASSRIDSFKGYMIISAGIDEVNYEQALKIIEEQVVAMKQGNFTEDELNQTKEMLINQ
HHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
LLETNDQAQGLIELVYNNVLRKANLDLENWIAKIKQATKEEVVAAINKIKPDTIYFLSKG
HHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECC
GEELHGKNHI
CHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]