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The map label for this gene is fni [H]

Identifier: 226223984

GI number: 226223984

Start: 1390449

End: 1391525

Strand: Direct

Name: fni [H]

Synonym: Lm4b_01392

Alternate gene names: 226223984

Gene position: 1390449-1391525 (Clockwise)

Preceding gene: 226223983

Following gene: 226223986

Centisome position: 47.74

GC content: 40.76

Gene sequence:

>1077_bases
ATGCAGAAGAACGATGACTTATTAAGAGAACGTCGAAAAGACGAACACGTGGCTCTTGGAGTAAAACAGAATGAGCAGTT
AGCGCCATCGAGTTTAGAAGATATTCAACTGATTGGAACTTCTATCCCGCGCTATAATGTGAAGGATATCGATTTAACCA
CAACTATTGTGGGGACCAATGTGCCTTTCCCATTGTATATTAATGCGATGACAGGTGGAAGTCGGCATACGAAAAAAATT
AATGCCGAACTTGCTGAAATAGCACGCGAAGCAGCTATCCCAATGGCTGTTGGTTCCCAGTCTGCAGCTCTAAAAAATAG
TTCGCTAATAGATACCTATAAAATTGTCAGAGAAATCAATCCGAATGGGATGATTTTAGCAAATATTAGTCCAGAAGTAG
CCCTTCAAGAGGGACTTCGGGCGATCGAAATGTTAGAGGCAAATGCACTTCAAATTCATATTAACCCGGCACAAGAATTA
GTTATGCAAGAAGGCGACCGTTCTTTTAGTCATTGGCTAACTAGAATAGAAGAGTACGTCAAGCTTTCGCCAGTTCCAGT
AGTTGTAAAAGAAGTTGGCTTTGGAATGACGCGTGAAACAGTAAAAACGCTAGCTGATATCGGCGTTCAAACCGTAGATT
TAGCTGGAAAAGGCGGAACAAACTTTGCCCAAATTGAAAATGACCGCCGCCGTGATCAAGCATATGATTTCTTACTTGAT
TGGGGTATTTCCACCGGACAGGCTTTAATAGACATGCAACACCAAGATGCGCCAAAGATTGCTTATTTAGCGTCAGGTGG
TATTAGGAACCCGTTAGATATCGTTAAAGCATTAGCGCTCGGAGCAGATAGTGTAGGTATGGCAGGACAAATTATTTATT
CACTAAAAAAAGAGGGCGTCACCAAAACCATTGAAAAACTGGAGCTATGGAAAGAACAACTACGTGGCTTATTTGTTCTT
GCAAATGCGAAAAACATCTCAGAATTAAAAACAACGCCATTAATCATAAGTGGTGAACTTGCTAAATGGGGCGCATTACG
AGAAATCGATTTAGTCAAACTAGCTAATAGAAAATAA

Upstream 100 bases:

>100_bases
GATGGGGAAGTGTATCAACCAACTCCCGAAGAAAAAGAGACGATTTTTAAACCTGTTTTAACCTTTGCTTGAGGCGAAAA
GAAATTTGGAGGATTAACAC

Downstream 100 bases:

>100_bases
AAACCAGCTGCTATTCATTTAGCAAAGCTGGTTTTTTATTTATTGAACCATTTCTGGTAAAGTTTCATCGATTGCTTGAA
GACGTTCAGTGAATTCTTCT

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase [H]

Number of amino acids: Translated: 358; Mature: 358

Protein sequence:

>358_residues
MQKNDDLLRERRKDEHVALGVKQNEQLAPSSLEDIQLIGTSIPRYNVKDIDLTTTIVGTNVPFPLYINAMTGGSRHTKKI
NAELAEIAREAAIPMAVGSQSAALKNSSLIDTYKIVREINPNGMILANISPEVALQEGLRAIEMLEANALQIHINPAQEL
VMQEGDRSFSHWLTRIEEYVKLSPVPVVVKEVGFGMTRETVKTLADIGVQTVDLAGKGGTNFAQIENDRRRDQAYDFLLD
WGISTGQALIDMQHQDAPKIAYLASGGIRNPLDIVKALALGADSVGMAGQIIYSLKKEGVTKTIEKLELWKEQLRGLFVL
ANAKNISELKTTPLIISGELAKWGALREIDLVKLANRK

Sequences:

>Translated_358_residues
MQKNDDLLRERRKDEHVALGVKQNEQLAPSSLEDIQLIGTSIPRYNVKDIDLTTTIVGTNVPFPLYINAMTGGSRHTKKI
NAELAEIAREAAIPMAVGSQSAALKNSSLIDTYKIVREINPNGMILANISPEVALQEGLRAIEMLEANALQIHINPAQEL
VMQEGDRSFSHWLTRIEEYVKLSPVPVVVKEVGFGMTRETVKTLADIGVQTVDLAGKGGTNFAQIENDRRRDQAYDFLLD
WGISTGQALIDMQHQDAPKIAYLASGGIRNPLDIVKALALGADSVGMAGQIIYSLKKEGVTKTIEKLELWKEQLRGLFVL
ANAKNISELKTTPLIISGELAKWGALREIDLVKLANRK
>Mature_358_residues
MQKNDDLLRERRKDEHVALGVKQNEQLAPSSLEDIQLIGTSIPRYNVKDIDLTTTIVGTNVPFPLYINAMTGGSRHTKKI
NAELAEIAREAAIPMAVGSQSAALKNSSLIDTYKIVREINPNGMILANISPEVALQEGLRAIEMLEANALQIHINPAQEL
VMQEGDRSFSHWLTRIEEYVKLSPVPVVVKEVGFGMTRETVKTLADIGVQTVDLAGKGGTNFAQIENDRRRDQAYDFLLD
WGISTGQALIDMQHQDAPKIAYLASGGIRNPLDIVKALALGADSVGMAGQIIYSLKKEGVTKTIEKLELWKEQLRGLFVL
ANAKNISELKTTPLIISGELAKWGALREIDLVKLANRK

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP) [H]

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179 [H]

Pfam domain/function: PF01070 FMN_dh [H]

EC number: =5.3.3.2 [H]

Molecular weight: Translated: 39397; Mature: 39397

Theoretical pI: Translated: 6.39; Mature: 6.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKNDDLLRERRKDEHVALGVKQNEQLAPSSLEDIQLIGTSIPRYNVKDIDLTTTIVGTN
CCCCHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEEECC
VPFPLYINAMTGGSRHTKKINAELAEIAREAAIPMAVGSQSAALKNSSLIDTYKIVREIN
CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEECCCHHHHCCCCHHHHHHHHHHCC
PNGMILANISPEVALQEGLRAIEMLEANALQIHINPAQELVMQEGDRSFSHWLTRIEEYV
CCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHCCCCHHHHHHHHHHHHH
KLSPVPVVVKEVGFGMTRETVKTLADIGVQTVDLAGKGGTNFAQIENDRRRDQAYDFLLD
HCCCCCHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCHHHHHHHHHHHHH
WGISTGQALIDMQHQDAPKIAYLASGGIRNPLDIVKALALGADSVGMAGQIIYSLKKEGV
CCCCCCHHEEECCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCH
TKTIEKLELWKEQLRGLFVLANAKNISELKTTPLIISGELAKWGALREIDLVKLANRK
HHHHHHHHHHHHHHCCEEEEECCCCHHHHCCCCEEEECCHHHCCCCCHHHHHHCCCCC
>Mature Secondary Structure
MQKNDDLLRERRKDEHVALGVKQNEQLAPSSLEDIQLIGTSIPRYNVKDIDLTTTIVGTN
CCCCHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCEEEEEEEECC
VPFPLYINAMTGGSRHTKKINAELAEIAREAAIPMAVGSQSAALKNSSLIDTYKIVREIN
CCCEEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEECCCHHHHCCCCHHHHHHHHHHCC
PNGMILANISPEVALQEGLRAIEMLEANALQIHINPAQELVMQEGDRSFSHWLTRIEEYV
CCCEEEEECCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHHCCCCHHHHHHHHHHHHH
KLSPVPVVVKEVGFGMTRETVKTLADIGVQTVDLAGKGGTNFAQIENDRRRDQAYDFLLD
HCCCCCHHHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCHHHHCCHHHHHHHHHHHHH
WGISTGQALIDMQHQDAPKIAYLASGGIRNPLDIVKALALGADSVGMAGQIIYSLKKEGV
CCCCCCHHEEECCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCH
TKTIEKLELWKEQLRGLFVLANAKNISELKTTPLIISGELAKWGALREIDLVKLANRK
HHHHHHHHHHHHHHCCEEEEECCCCHHHHCCCCEEEECCHHHCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA