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The map label for this gene is rimP [H]

Identifier: 226223922

GI number: 226223922

Start: 1335149

End: 1335616

Strand: Direct

Name: rimP [H]

Synonym: Lm4b_01329

Alternate gene names: 226223922

Gene position: 1335149-1335616 (Clockwise)

Preceding gene: 226223921

Following gene: 226223923

Centisome position: 45.84

GC content: 37.61

Gene sequence:

>468_bases
ATGAGTAAAGTACTAGAACAAGTAGAAGCAATTGTTACACCAATCACGGATGAACTTCAACTAGAACTCGTAGATATTGC
CTTTGAAAAAGAAGGTCCAAATTGGTTTTTACGAATTTTTATTGACAAAGATGGTGGCGTAGATATCGATGAATGCGCAG
CCGTGAGCGAAAAAGTTAGTGAAAAAATGGACGAAAATGACCCCATTACACAAAACTACTTTTTAGAAGTATCTTCTCCT
GGGGCTGAACGTCCACTGAAGAAAGAGCAAGATTTTGAAAATGCGGTAAGTAAATATGTTCACGTTACTTCATATGAACC
AATTGATGGCCGTAAAATGTGGGAAGGAACGCTTGTTAGTTATGACGGGACAACACTCGTTATTACTATCACGGACAAAA
CACGCAAAATCACTTGTGAAATTCCTAAAGACAAAGTAGCCAAAGCAAGACTCGCAATTCAATTTTAA

Upstream 100 bases:

>100_bases
CAATGCCCACGCTTTCGTTTTGCAAATCTGTCAAAGAGTCACCTGTGGCAGAAGTAGGGGACGAATTAGCTGGAAAAGCG
TATCTCTTAAGGAGGCTGAA

Downstream 100 bases:

>100_bases
AAAGCAAAGAATAAGGAGCTGAATAAAAAATGAGCACAGAATTATTAGATGCTCTTCATGTGTTAGAACATGATAAAGGT
ATTTCAAGAGAGGTTTTAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MSKVLEQVEAIVTPITDELQLELVDIAFEKEGPNWFLRIFIDKDGGVDIDECAAVSEKVSEKMDENDPITQNYFLEVSSP
GAERPLKKEQDFENAVSKYVHVTSYEPIDGRKMWEGTLVSYDGTTLVITITDKTRKITCEIPKDKVAKARLAIQF

Sequences:

>Translated_155_residues
MSKVLEQVEAIVTPITDELQLELVDIAFEKEGPNWFLRIFIDKDGGVDIDECAAVSEKVSEKMDENDPITQNYFLEVSSP
GAERPLKKEQDFENAVSKYVHVTSYEPIDGRKMWEGTLVSYDGTTLVITITDKTRKITCEIPKDKVAKARLAIQF
>Mature_154_residues
SKVLEQVEAIVTPITDELQLELVDIAFEKEGPNWFLRIFIDKDGGVDIDECAAVSEKVSEKMDENDPITQNYFLEVSSPG
AERPLKKEQDFENAVSKYVHVTSYEPIDGRKMWEGTLVSYDGTTLVITITDKTRKITCEIPKDKVAKARLAIQF

Specific function: Required for maturation of 30S ribosomal subunits [H]

COG id: COG0779

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rimP family [H]

Homologues:

Organism=Escherichia coli, GI226510978, Length=133, Percent_Identity=36.0902255639098, Blast_Score=91, Evalue=4e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003728 [H]

Pfam domain/function: PF02576 DUF150 [H]

EC number: NA

Molecular weight: Translated: 17545; Mature: 17414

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKVLEQVEAIVTPITDELQLELVDIAFEKEGPNWFLRIFIDKDGGVDIDECAAVSEKVS
CHHHHHHHHHHHCCCCCHHEEEEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHH
EKMDENDPITQNYFLEVSSPGAERPLKKEQDFENAVSKYVHVTSYEPIDGRKMWEGTLVS
HHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHEEEEECCCCCCCCEECCCEEEE
YDGTTLVITITDKTRKITCEIPKDKVAKARLAIQF
ECCCEEEEEEECCCEEEEEECCCHHHHHEEEEEEC
>Mature Secondary Structure 
SKVLEQVEAIVTPITDELQLELVDIAFEKEGPNWFLRIFIDKDGGVDIDECAAVSEKVS
HHHHHHHHHHHCCCCCHHEEEEEEEEEECCCCCEEEEEEEECCCCCCHHHHHHHHHHHH
EKMDENDPITQNYFLEVSSPGAERPLKKEQDFENAVSKYVHVTSYEPIDGRKMWEGTLVS
HHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHEEEEECCCCCCCCEECCCEEEE
YDGTTLVITITDKTRKITCEIPKDKVAKARLAIQF
ECCCEEEEEEECCCEEEEEECCCHHHHHEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]