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The map label for this gene is yhdW [H]

Identifier: 226223245

GI number: 226223245

Start: 658597

End: 660348

Strand: Direct

Name: yhdW [H]

Synonym: Lm4b_00642

Alternate gene names: 226223245

Gene position: 658597-660348 (Clockwise)

Preceding gene: 226223243

Following gene: 226223248

Centisome position: 22.61

GC content: 34.82

Gene sequence:

>1752_bases
ATGAATGATTTAAAAGACATTTTTAAAGTATTGTATCAGTTTAAGACAGATTATCTCAAAGTAACCTTATTATTAACAAT
CTTACAGGCATTTGTGATGGGGCCATTTATTTATTATTTCTTTTTCTTTATTCTCCGAGTCATCGGAGTGCCAGGAATTA
CAGACGCCAATCTTGGAGAAGTTTTTTCGAGTCCTGTTGCCGTTATTATGCTGCTGATTTTAGCTTTACTCATTTTACTG
TTTATATATTATGAACTGGGTTTCTTTATAATGATGGCAATTTATCAATTGCGGGGAGAAAGCTATACCGTTTTCAAAAT
CATACAAAGACTCAATGTAAAAGCGAAATACTTTCTTAGTTATCAAGCAATTTATTTTCTGCTATATTTCTTTTTACTTT
TGCCCATTGCAGGATTATCTTTACCAATTACGATAACAGAAAACCTCTATTTACCACATTTTATTACGGATGAATTAATG
AAAACGACGACGGGAACGTGGCTGTATGTTATTGCAATTGCGATTATTTTCTATATTAGCGCCAGACTTGTGTTTGCTTT
GCCCTATTTCATTGAAGACAAATCACTAAAAATAAGTGGGGCTATCCGAAAAAGTTGGAAATACCCGCAAAAAAACTTAT
TTTTCATGTTACTAAAATGGGTTTTAATAATTGTTGCGATTGGCTTTTTAGTATCGATTATCGCAACGATTATGATGTTG
CCGCTTCTCTTAATAGAAAAAATAACTCCGGGAATTGCGGTGTTTATAGCGGGTATTACTTTAACCATACTACAAGTGAT
AGGTTTCTTTGCCGCTGGAATTTTTCAAGGAATCATTGCGCAATTATTAGTGAAGAACGCCTTTGCTATAGAAGGACAAC
CAGCACTTGTGACGCGCAACCAGTTCCCGCATAAAAAGCGATTTATTATTGTAGCGATAATCGTTTTCATTATTTTTAGT
AGTTTTAATATTTATACAGTGAATGCGACTTTATATGAACCTAACACGAAAATAATCGCCCATCGAGGTGATACAATGAA
TGCTGTTGAAAATACGGTGGAAGCCATTGAATCAGCTGCTGAGGCTGGGGCAGATTACAGCGAAATTGATATTCAAGAAA
CCAAAGATCATCAGTTTGTCGTTTTCCATGATATGACACTGAGAAGACTTGCTGGCAGTTCTAAACGAGTAGCAGATATG
ACTTTAAACGAGTTGCAGCAAACTAAAGTGAAGAGTGGCGACTATTCGTCTCATATAGCTTCTTTCGATGAAATTATTAA
GACGGCGAAAAGGAATAAGATAGATTTACTCGTGGAAGTGAAGTTGCATGGCGGGGAATCTAGCGATATGGTGGAACGAC
TTGTCACATTGTTAAAGAAAGAAAAAGTAACCGATAAATATCTAGTCCAATCGTTGGACCAACCAGTTATCGAAAAAATA
GAACAAGCTGACCCTACGCTTGAAACTGGCATCATATTAGCGCTTAATATTGGAAACTTACCAAAAACATCTGCCGATTT
TATTGTTTTAGAAGATTTTTCTATTAATAAACGATTACTTACACAAGCCAGACAAAATAATAAAAGGGTGTTTGTTTGGA
CGGTAAATAAAGAAAAACTAATGCAAATGTATTTGCGAAAGAATGTAGATGGAATCATTACCAATTATCCTAAAAAGGCG
ATAGAGCTTAGGGAATCTTTTAATGAAAATGATTCTTTGCGAAGTCGTATTGAAAATAGGTTAGGCTTTTAA

Upstream 100 bases:

>100_bases
ACCTCGTTTCAATAGTTAACTTTATGAATTAATTATAACTAAATTTGCTTCTTGGATAAACTATAAAGCCTTGAAAATTA
AACAAAAAAGGGAGAAGCAA

Downstream 100 bases:

>100_bases
ATAAAAAGCCGCAAACAAGCACTGTTTGCGGCTGATTTTTATTTTAGTTCAAATGATTTTTTAACAGCGTTTTTGCTGAA
ACTAATTAATTCTTTTGCTT

Product: hypothetical protein

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 583; Mature: 583

Protein sequence:

>583_residues
MNDLKDIFKVLYQFKTDYLKVTLLLTILQAFVMGPFIYYFFFFILRVIGVPGITDANLGEVFSSPVAVIMLLILALLILL
FIYYELGFFIMMAIYQLRGESYTVFKIIQRLNVKAKYFLSYQAIYFLLYFFLLLPIAGLSLPITITENLYLPHFITDELM
KTTTGTWLYVIAIAIIFYISARLVFALPYFIEDKSLKISGAIRKSWKYPQKNLFFMLLKWVLIIVAIGFLVSIIATIMML
PLLLIEKITPGIAVFIAGITLTILQVIGFFAAGIFQGIIAQLLVKNAFAIEGQPALVTRNQFPHKKRFIIVAIIVFIIFS
SFNIYTVNATLYEPNTKIIAHRGDTMNAVENTVEAIESAAEAGADYSEIDIQETKDHQFVVFHDMTLRRLAGSSKRVADM
TLNELQQTKVKSGDYSSHIASFDEIIKTAKRNKIDLLVEVKLHGGESSDMVERLVTLLKKEKVTDKYLVQSLDQPVIEKI
EQADPTLETGIILALNIGNLPKTSADFIVLEDFSINKRLLTQARQNNKRVFVWTVNKEKLMQMYLRKNVDGIITNYPKKA
IELRESFNENDSLRSRIENRLGF

Sequences:

>Translated_583_residues
MNDLKDIFKVLYQFKTDYLKVTLLLTILQAFVMGPFIYYFFFFILRVIGVPGITDANLGEVFSSPVAVIMLLILALLILL
FIYYELGFFIMMAIYQLRGESYTVFKIIQRLNVKAKYFLSYQAIYFLLYFFLLLPIAGLSLPITITENLYLPHFITDELM
KTTTGTWLYVIAIAIIFYISARLVFALPYFIEDKSLKISGAIRKSWKYPQKNLFFMLLKWVLIIVAIGFLVSIIATIMML
PLLLIEKITPGIAVFIAGITLTILQVIGFFAAGIFQGIIAQLLVKNAFAIEGQPALVTRNQFPHKKRFIIVAIIVFIIFS
SFNIYTVNATLYEPNTKIIAHRGDTMNAVENTVEAIESAAEAGADYSEIDIQETKDHQFVVFHDMTLRRLAGSSKRVADM
TLNELQQTKVKSGDYSSHIASFDEIIKTAKRNKIDLLVEVKLHGGESSDMVERLVTLLKKEKVTDKYLVQSLDQPVIEKI
EQADPTLETGIILALNIGNLPKTSADFIVLEDFSINKRLLTQARQNNKRVFVWTVNKEKLMQMYLRKNVDGIITNYPKKA
IELRESFNENDSLRSRIENRLGF
>Mature_583_residues
MNDLKDIFKVLYQFKTDYLKVTLLLTILQAFVMGPFIYYFFFFILRVIGVPGITDANLGEVFSSPVAVIMLLILALLILL
FIYYELGFFIMMAIYQLRGESYTVFKIIQRLNVKAKYFLSYQAIYFLLYFFLLLPIAGLSLPITITENLYLPHFITDELM
KTTTGTWLYVIAIAIIFYISARLVFALPYFIEDKSLKISGAIRKSWKYPQKNLFFMLLKWVLIIVAIGFLVSIIATIMML
PLLLIEKITPGIAVFIAGITLTILQVIGFFAAGIFQGIIAQLLVKNAFAIEGQPALVTRNQFPHKKRFIIVAIIVFIIFS
SFNIYTVNATLYEPNTKIIAHRGDTMNAVENTVEAIESAAEAGADYSEIDIQETKDHQFVVFHDMTLRRLAGSSKRVADM
TLNELQQTKVKSGDYSSHIASFDEIIKTAKRNKIDLLVEVKLHGGESSDMVERLVTLLKKEKVTDKYLVQSLDQPVIEKI
EQADPTLETGIILALNIGNLPKTSADFIVLEDFSINKRLLTQARQNNKRVFVWTVNKEKLMQMYLRKNVDGIITNYPKKA
IELRESFNENDSLRSRIENRLGF

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG4781

COG function: function code C; Membrane domain of membrane-anchored glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

Organism=Escherichia coli, GI1789858, Length=235, Percent_Identity=24.6808510638298, Blast_Score=65, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17556807, Length=194, Percent_Identity=26.8041237113402, Blast_Score=67, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 66546; Mature: 66546

Theoretical pI: Translated: 9.53; Mature: 9.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDLKDIFKVLYQFKTDYLKVTLLLTILQAFVMGPFIYYFFFFILRVIGVPGITDANLGE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
VFSSPVAVIMLLILALLILLFIYYELGFFIMMAIYQLRGESYTVFKIIQRLNVKAKYFLS
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHH
YQAIYFLLYFFLLLPIAGLSLPITITENLYLPHFITDELMKTTTGTWLYVIAIAIIFYIS
HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
ARLVFALPYFIEDKSLKISGAIRKSWKYPQKNLFFMLLKWVLIIVAIGFLVSIIATIMML
HHHHHHHHHHCCCCCEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLLLIEKITPGIAVFIAGITLTILQVIGFFAAGIFQGIIAQLLVKNAFAIEGQPALVTRN
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEECC
QFPHKKRFIIVAIIVFIIFSSFNIYTVNATLYEPNTKIIAHRGDTMNAVENTVEAIESAA
CCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHH
EAGADYSEIDIQETKDHQFVVFHDMTLRRLAGSSKRVADMTLNELQQTKVKSGDYSSHIA
HCCCCCCCCCCEECCCCCEEEEECHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
SFDEIIKTAKRNKIDLLVEVKLHGGESSDMVERLVTLLKKEKVTDKYLVQSLDQPVIEKI
HHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHH
EQADPTLETGIILALNIGNLPKTSADFIVLEDFSINKRLLTQARQNNKRVFVWTVNKEKL
HHCCCCHHCCEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHH
MQMYLRKNVDGIITNYPKKAIELRESFNENDSLRSRIENRLGF
HHHHHHHCCCHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure
MNDLKDIFKVLYQFKTDYLKVTLLLTILQAFVMGPFIYYFFFFILRVIGVPGITDANLGE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
VFSSPVAVIMLLILALLILLFIYYELGFFIMMAIYQLRGESYTVFKIIQRLNVKAKYFLS
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHH
YQAIYFLLYFFLLLPIAGLSLPITITENLYLPHFITDELMKTTTGTWLYVIAIAIIFYIS
HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
ARLVFALPYFIEDKSLKISGAIRKSWKYPQKNLFFMLLKWVLIIVAIGFLVSIIATIMML
HHHHHHHHHHCCCCCEEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLLLIEKITPGIAVFIAGITLTILQVIGFFAAGIFQGIIAQLLVKNAFAIEGQPALVTRN
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEECC
QFPHKKRFIIVAIIVFIIFSSFNIYTVNATLYEPNTKIIAHRGDTMNAVENTVEAIESAA
CCCCHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEECCCCHHHHHHHHHHHHHHH
EAGADYSEIDIQETKDHQFVVFHDMTLRRLAGSSKRVADMTLNELQQTKVKSGDYSSHIA
HCCCCCCCCCCEECCCCCEEEEECHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHH
SFDEIIKTAKRNKIDLLVEVKLHGGESSDMVERLVTLLKKEKVTDKYLVQSLDQPVIEKI
HHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHH
EQADPTLETGIILALNIGNLPKTSADFIVLEDFSINKRLLTQARQNNKRVFVWTVNKEKL
HHCCCCHHCCEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEECCHHHH
MQMYLRKNVDGIITNYPKKAIELRESFNENDSLRSRIENRLGF
HHHHHHHCCCHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]