| Definition | Listeria monocytogenes Clip81459, complete genome. |
|---|---|
| Accession | NC_012488 |
| Length | 2,912,690 |
Click here to switch to the map view.
The map label for this gene is 226223157
Identifier: 226223157
GI number: 226223157
Start: 567896
End: 569392
Strand: Direct
Name: 226223157
Synonym: Lm4b_00554
Alternate gene names: NA
Gene position: 567896-569392 (Clockwise)
Preceding gene: 226223156
Following gene: 226223158
Centisome position: 19.5
GC content: 39.14
Gene sequence:
>1497_bases ATGCGTAAAAAACTGATTGTAAGTATTCTGCTAGCATTCATGATTTTCGTTGTTGGTGGGCATTCCGCAATTGCAAAATC GGATGACGGTGTCGTTGTTTTTTATGATAGTTTGGCGACAGGTACAGAGAATGAAGGCAATATGGATGCGCTACTTCGAA TGTTAAATAGCTTGGGCAAACGAGTGACGATTTATTCTTGGGAGGAAAATCCTGATTTAAGTCAAACAAGCGAAATCATC GTACTTCAAAATAAAAAAGACGGTTTATCCAATAAATGGACGAATAAATTAGCCAAAAGCAAAGCGAAAATAGCATACAT AGGCGGAAATCCCCCAACATTTTTAACGGATAAATTGCAACTGAAAACTAAAGCAATTACAGAGGCTTCTATCACAATTC AAACGCAAGCTGGATTGTCTGGAAAACCACAGCTGGTGAACGAAACAAATCTAATTACTTCCTATAAAGGAACAAGCTTT GGTGAAATGGACGCAGCTGAAAATGGACAAGCTGCATACGGCGTTCAAGCAGGAAATTACGCGTACGCACCTCTTTTTCA AGCAGATAATACGAGTGAATTTGCTCTAATGGACGTACTCAAAGCATTATTCGATATTAAAACGACCACCAACCAATATG CGTTTATTACGGGCGTAAATCCTTTTATTGATTTCGATTTGCTCAAAAAAACGGCAGATACTTTTTATGAAAAAGGAATT CCGTTTATCGTGAGTGCGGGGCCTGTTTTTTACAATCAAGATTTCCAAGCGGCGAAAAATTATGCGGAGATTTTGCGCTA CGTTCAAGCAAAAAACGGCACGATTATGATGAACGTTCCAGCAGTGACGTACGGAGATAGTCCAGCGGGAGAACTTGAAA AGATTATGCAAAAATCGGTACATTTCTTCGCGGAAAATGACGTCGCACCGCTTGGAGTTACAGCAGAACTGTACTGGAAC TTTGATAAAGTATATGGCGTAGAAGGTTTCGCACCGTTTAATACCGGGATTTTGCTACCAAATCAAAAAATCATCCATAC GACGAAAGTAAATAATGGCAGTGCATTTGAAAAGTCTCCGTATAGCGTGGCGAACGATTTTTATGCGACTACGACTGAAG GGAGAACCTTCCCGGTCGATATCGCGATAACCTATCCCTTCTTTGATAACGAGAAAGAATTAAAAGCAGCTGCTGAGGAA CTAGCGAACGACAATATTAGTGATTTTAGATTCCAAGATCATGGGGTAAAAACAAATAAGGATACGATTGAATCGAGTGC AGGCTCACTTTATATCAATAATCAATCCGTTACGCTCGATGGCGATTTAAACTATATTAAAACGAAAAATAAAACAGTCA AACAGGCGGGCAGTTTAGAAGGGTTCTTCGGCTATCAAAACACCTTTTTCACGATAGTAATTGTACTTTCACTTGGCATT ATTGGGGTTTTATTTGTCTTTGGATACCGGCTTTACATGAAAAAATATATGAAATGA
Upstream 100 bases:
>100_bases ACGAAACATAATTTCTTATTTAATGTGTGCTTTGATTTGACGATGTTAATTGGAGCGGCTTCTCTGCTGGAAGTTTACAT GAAGAAGAGAGGTGAGCGGA
Downstream 100 bases:
>100_bases GGTGAAATAAATGGTTATTGCAGATTATTTAGCATTATTCGCGGTGGTGTGTATTTGGGGACTTTTGCTAATTAATATAG TGTTAATTGTTGCAGGATAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 498; Mature: 498
Protein sequence:
>498_residues MRKKLIVSILLAFMIFVVGGHSAIAKSDDGVVVFYDSLATGTENEGNMDALLRMLNSLGKRVTIYSWEENPDLSQTSEII VLQNKKDGLSNKWTNKLAKSKAKIAYIGGNPPTFLTDKLQLKTKAITEASITIQTQAGLSGKPQLVNETNLITSYKGTSF GEMDAAENGQAAYGVQAGNYAYAPLFQADNTSEFALMDVLKALFDIKTTTNQYAFITGVNPFIDFDLLKKTADTFYEKGI PFIVSAGPVFYNQDFQAAKNYAEILRYVQAKNGTIMMNVPAVTYGDSPAGELEKIMQKSVHFFAENDVAPLGVTAELYWN FDKVYGVEGFAPFNTGILLPNQKIIHTTKVNNGSAFEKSPYSVANDFYATTTEGRTFPVDIAITYPFFDNEKELKAAAEE LANDNISDFRFQDHGVKTNKDTIESSAGSLYINNQSVTLDGDLNYIKTKNKTVKQAGSLEGFFGYQNTFFTIVIVLSLGI IGVLFVFGYRLYMKKYMK
Sequences:
>Translated_498_residues MRKKLIVSILLAFMIFVVGGHSAIAKSDDGVVVFYDSLATGTENEGNMDALLRMLNSLGKRVTIYSWEENPDLSQTSEII VLQNKKDGLSNKWTNKLAKSKAKIAYIGGNPPTFLTDKLQLKTKAITEASITIQTQAGLSGKPQLVNETNLITSYKGTSF GEMDAAENGQAAYGVQAGNYAYAPLFQADNTSEFALMDVLKALFDIKTTTNQYAFITGVNPFIDFDLLKKTADTFYEKGI PFIVSAGPVFYNQDFQAAKNYAEILRYVQAKNGTIMMNVPAVTYGDSPAGELEKIMQKSVHFFAENDVAPLGVTAELYWN FDKVYGVEGFAPFNTGILLPNQKIIHTTKVNNGSAFEKSPYSVANDFYATTTEGRTFPVDIAITYPFFDNEKELKAAAEE LANDNISDFRFQDHGVKTNKDTIESSAGSLYINNQSVTLDGDLNYIKTKNKTVKQAGSLEGFFGYQNTFFTIVIVLSLGI IGVLFVFGYRLYMKKYMK >Mature_498_residues MRKKLIVSILLAFMIFVVGGHSAIAKSDDGVVVFYDSLATGTENEGNMDALLRMLNSLGKRVTIYSWEENPDLSQTSEII VLQNKKDGLSNKWTNKLAKSKAKIAYIGGNPPTFLTDKLQLKTKAITEASITIQTQAGLSGKPQLVNETNLITSYKGTSF GEMDAAENGQAAYGVQAGNYAYAPLFQADNTSEFALMDVLKALFDIKTTTNQYAFITGVNPFIDFDLLKKTADTFYEKGI PFIVSAGPVFYNQDFQAAKNYAEILRYVQAKNGTIMMNVPAVTYGDSPAGELEKIMQKSVHFFAENDVAPLGVTAELYWN FDKVYGVEGFAPFNTGILLPNQKIIHTTKVNNGSAFEKSPYSVANDFYATTTEGRTFPVDIAITYPFFDNEKELKAAAEE LANDNISDFRFQDHGVKTNKDTIESSAGSLYINNQSVTLDGDLNYIKTKNKTVKQAGSLEGFFGYQNTFFTIVIVLSLGI IGVLFVFGYRLYMKKYMK
Specific function: Unknown
COG id: COG5298
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 55045; Mature: 55045
Theoretical pI: Translated: 5.56; Mature: 5.56
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRKKLIVSILLAFMIFVVGGHSAIAKSDDGVVVFYDSLATGTENEGNMDALLRMLNSLGK CCHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCC RVTIYSWEENPDLSQTSEIIVLQNKKDGLSNKWTNKLAKSKAKIAYIGGNPPTFLTDKLQ EEEEEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCEEECCEE LKTKAITEASITIQTQAGLSGKPQLVNETNLITSYKGTSFGEMDAAENGQAAYGVQAGNY EEEHEEEEEEEEEEEECCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCE AYAPLFQADNTSEFALMDVLKALFDIKTTTNQYAFITGVNPFIDFDLLKKTADTFYEKGI EEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC PFIVSAGPVFYNQDFQAAKNYAEILRYVQAKNGTIMMNVPAVTYGDSPAGELEKIMQKSV CEEEECCCEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCEEEECCCCHHHHHHHHHHHH HFFAENDVAPLGVTAELYWNFDKVYGVEGFAPFNTGILLPNQKIIHTTKVNNGSAFEKSP HEEECCCCCCCEEEEEEEECHHHHCCCCCCCCCCCCEECCCCEEEEEEECCCCCCCCCCC YSVANDFYATTTEGRTFPVDIAITYPFFDNEKELKAAAEELANDNISDFRFQDHGVKTNK CHHHCCCEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCC DTIESSAGSLYINNQSVTLDGDLNYIKTKNKTVKQAGSLEGFFGYQNTFFTIVIVLSLGI HHHHCCCCEEEECCCEEEECCCCCEEECCCHHHHHCCCCCEECCCCHHHHHHHHHHHHHH IGVLFVFGYRLYMKKYMK HHHHHHHHHHHHHHHHCC >Mature Secondary Structure MRKKLIVSILLAFMIFVVGGHSAIAKSDDGVVVFYDSLATGTENEGNMDALLRMLNSLGK CCHHHHHHHHHHHHHHHHCCCCCEEECCCCEEEEECCCCCCCCCCCCHHHHHHHHHHCCC RVTIYSWEENPDLSQTSEIIVLQNKKDGLSNKWTNKLAKSKAKIAYIGGNPPTFLTDKLQ EEEEEEECCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEECCCCCCEEECCEE LKTKAITEASITIQTQAGLSGKPQLVNETNLITSYKGTSFGEMDAAENGQAAYGVQAGNY EEEHEEEEEEEEEEEECCCCCCCCEECCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCE AYAPLFQADNTSEFALMDVLKALFDIKTTTNQYAFITGVNPFIDFDLLKKTADTFYEKGI EEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCC PFIVSAGPVFYNQDFQAAKNYAEILRYVQAKNGTIMMNVPAVTYGDSPAGELEKIMQKSV CEEEECCCEEECCCHHHHHHHHHHHHHHHCCCCEEEEECCEEEECCCCHHHHHHHHHHHH HFFAENDVAPLGVTAELYWNFDKVYGVEGFAPFNTGILLPNQKIIHTTKVNNGSAFEKSP HEEECCCCCCCEEEEEEEECHHHHCCCCCCCCCCCCEECCCCEEEEEEECCCCCCCCCCC YSVANDFYATTTEGRTFPVDIAITYPFFDNEKELKAAAEELANDNISDFRFQDHGVKTNK CHHHCCCEEECCCCCEEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCC DTIESSAGSLYINNQSVTLDGDLNYIKTKNKTVKQAGSLEGFFGYQNTFFTIVIVLSLGI HHHHCCCCEEEECCCEEEECCCCCEEECCCHHHHHCCCCCEECCCCHHHHHHHHHHHHHH IGVLFVFGYRLYMKKYMK HHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA