| Definition | Listeria monocytogenes Clip81459, complete genome. |
|---|---|
| Accession | NC_012488 |
| Length | 2,912,690 |
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The map label for this gene is 226222791
Identifier: 226222791
GI number: 226222791
Start: 154415
End: 156754
Strand: Direct
Name: 226222791
Synonym: Lm4b_00157
Alternate gene names: NA
Gene position: 154415-156754 (Clockwise)
Preceding gene: 226222789
Following gene: 226222792
Centisome position: 5.3
GC content: 39.36
Gene sequence:
>2340_bases ATGAGGAGAGTGCGTATTTCAGTTAGGCGTTTAGTGGAGTTTGTGCGGAGAAGCGGTAGTATTGATAACCGGATGACAAA TTCAGACCGCGCCTTAGAAGGAACAAAAATTCATCAATTACTCCAAAAAGAAGCTGGGGAAGAATATGCCGCAGAAGTAC GGCTAAACCTAGAACGAATAGTGGACGGAATTGCTTTTTCGCTTGATGGACGCGCAGATGGCATCATAAATAGTCGGATG ATTGATGAAATTAAAACAACAGAGACGCCAATGGATGAAATTACCGAAGATTTTCGACCTCTTCACTGGGCGCAACTTAT TTGTTATGGATTTATGCTTGCAGAAAAGTCCGATTTGGCAGAAGTTACTCTGCAATTAACGTATTATCAAGTAGTTGACA AAGAAGTAAAACAATTTCAACATGTAATGAGTCGCGAGGAACTGAGTGTTTTTGTGGACGATTTACTTTCCCAATATGCT ATTTGGGCAAAGGCATCTGCCGCTTGGGAAATGAAACGAAATAAAACAATTCAAGAATTAACGTTTCCATACGACAACTA TCGAAGTGGGCAAAGAGAGCTCGCCATTGCGGTGTACCGAACAATATCTTCAGAAGAAAGTTTGTTTTGTGAAGCACCCA CAGGTATCGGCAAAACAATGTCGACCTTGTTTCCCGGTATTAAAGCTATGGGTGAAGGGAAAACGGATAAATTATTTTAC TTTACTGCAAAAACAATCACGCGACAAGTTGCCGAAGATGCACTAGATGAGATGCGTCGTAAAGGACTGGCTGCAAGGAG TGTTACAATAACTGCGAAGGATAAGATATGTTTTTTAGACGAGCGGAAATGTGAACCAGATCATTGCCAATTTGCGCGTG GTTATTATGATCGTTTGAACGAAGCGTTGTTTGATATGTTGCAATCCGAAGAAGCGATTACCCGTCAAGTTGTTGAGGGT TATGCCCGAAAATACACACTTTGTCCATTTGAATTATCGCTGGATGTGGCTCTTTTTTGTGATGTAATAGTTTGTGATTA TAATTATTTATTCGACCCAGTAGTTTACTTAAAACGCTTTTTTGCAGAAGGACCGGGAAAATATACTTTTCTTGTAGATG AAGTGCATAATTTAGTAGACCGTGCGCGCTCGATGTATTCGGCGACATTAAAAAAATCAACAGTTATGCAAGTCAAACGG GGACTAGATTCAAAAAAGAACAAACGATTGCTAAATGCAATAAATGTGATGAATAAAGAAATGATTGTGCTTAACAAAAA ACTAAAGGACTTAGAAAAAACGACTTATGTCCAAAAAAGTGAACTCGTTGATTGGAATGCAGCTGTGTTAAAATTCACCT TTGTAGCGAAGGAATGGTTGCCGCAAAATACTCAGTCAGAATTACAAGTGGATGTGTTGGACCTTTATTTTGAAAGTTTA AGATATACTGCCATTGCGGAGTTTTATGATGAGCGTTACGTCACACAAGTTACGAGAAATCACAGGGATTTAGAAATAAA ACAACTATGTTTGGATCCGGCGTTCTTATTATCAGAGAGGCTAAAACTCGGAAGCAGTTCGGTGCTTTTTTCAGCAACGC TTCGACCAATAGATTACTATACAAATGTACTTGGTGGTCAAGAAGACACTAGTAGAATGATCTTTTCTTCGCCATTTAAA CAAAAAAACATGCATTTACTAGTAGCGGATTATATTAGTACGAAATACCAAATGCGTGAAAATAGTATGGAAGCTGTCGT GGATGCTCTCTATGCTCTCGTCTCTGGGAAAAACGGTAACTATATATTTTTCTTTCCATCATTTCTATATTTACAAAAGG TATATGATTTATTTAAAGAAAAATATCCTAACATCAGGTTGCAAAAACAAGAGACTGCTATGGATGAAAAGCAGCGAGAG CATTTTTTAGAAGATTTTCATGCAGAGAATGTAGAAACCTTGATTGGCTTTTGCGTTTTAGGAGGCGTTTTTTCAGAAGG GGTAGATCTTCGCGGGAACCGATTAGTCGGTGCGGCTGTCGTTGGTGTAGGACTTGCGCAATTGAATCACGAATCTGATT TAATTAAAGATTATTATAATGAAACGATTGGTCGGGGATTTGATTATGCATATCAGATACCAGGAATGAATAAGGTGCTT CAAGCAGTTGGCCGGGTTATTCGAGGAGAATCAGATCGTGGCGTAGTGTTGTTAATAGAAGAACGATTTTCTGCCGATCG TTACCGAGCGTTGTTCCCTACGCACTGGAATCATGCGAAAACAGTGAAGACCACAGACGATATCTCCCGAGAAGTGGCCG GATTTTGGCGGAATAGCTAA
Upstream 100 bases:
>100_bases ATGTCTTATCATAAAAGTCCAAAATTAGTATTTTTTATTGAATTGTTACGAACGTAGGTTCTGTGTTATAATTCAACTGG ATTGTAAAGGAGGACTATTG
Downstream 100 bases:
>100_bases TTTTCTAGTAGAATAGAAGTAATTAGTCATTTTGGGAGGAAATTATGTATAAAATTATCGCGATAGATATTGATGGCACT TTATTAAACGACGCACACGA
Product: ATP dependent helicase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 779; Mature: 779
Protein sequence:
>779_residues MRRVRISVRRLVEFVRRSGSIDNRMTNSDRALEGTKIHQLLQKEAGEEYAAEVRLNLERIVDGIAFSLDGRADGIINSRM IDEIKTTETPMDEITEDFRPLHWAQLICYGFMLAEKSDLAEVTLQLTYYQVVDKEVKQFQHVMSREELSVFVDDLLSQYA IWAKASAAWEMKRNKTIQELTFPYDNYRSGQRELAIAVYRTISSEESLFCEAPTGIGKTMSTLFPGIKAMGEGKTDKLFY FTAKTITRQVAEDALDEMRRKGLAARSVTITAKDKICFLDERKCEPDHCQFARGYYDRLNEALFDMLQSEEAITRQVVEG YARKYTLCPFELSLDVALFCDVIVCDYNYLFDPVVYLKRFFAEGPGKYTFLVDEVHNLVDRARSMYSATLKKSTVMQVKR GLDSKKNKRLLNAINVMNKEMIVLNKKLKDLEKTTYVQKSELVDWNAAVLKFTFVAKEWLPQNTQSELQVDVLDLYFESL RYTAIAEFYDERYVTQVTRNHRDLEIKQLCLDPAFLLSERLKLGSSSVLFSATLRPIDYYTNVLGGQEDTSRMIFSSPFK QKNMHLLVADYISTKYQMRENSMEAVVDALYALVSGKNGNYIFFFPSFLYLQKVYDLFKEKYPNIRLQKQETAMDEKQRE HFLEDFHAENVETLIGFCVLGGVFSEGVDLRGNRLVGAAVVGVGLAQLNHESDLIKDYYNETIGRGFDYAYQIPGMNKVL QAVGRVIRGESDRGVVLLIEERFSADRYRALFPTHWNHAKTVKTTDDISREVAGFWRNS
Sequences:
>Translated_779_residues MRRVRISVRRLVEFVRRSGSIDNRMTNSDRALEGTKIHQLLQKEAGEEYAAEVRLNLERIVDGIAFSLDGRADGIINSRM IDEIKTTETPMDEITEDFRPLHWAQLICYGFMLAEKSDLAEVTLQLTYYQVVDKEVKQFQHVMSREELSVFVDDLLSQYA IWAKASAAWEMKRNKTIQELTFPYDNYRSGQRELAIAVYRTISSEESLFCEAPTGIGKTMSTLFPGIKAMGEGKTDKLFY FTAKTITRQVAEDALDEMRRKGLAARSVTITAKDKICFLDERKCEPDHCQFARGYYDRLNEALFDMLQSEEAITRQVVEG YARKYTLCPFELSLDVALFCDVIVCDYNYLFDPVVYLKRFFAEGPGKYTFLVDEVHNLVDRARSMYSATLKKSTVMQVKR GLDSKKNKRLLNAINVMNKEMIVLNKKLKDLEKTTYVQKSELVDWNAAVLKFTFVAKEWLPQNTQSELQVDVLDLYFESL RYTAIAEFYDERYVTQVTRNHRDLEIKQLCLDPAFLLSERLKLGSSSVLFSATLRPIDYYTNVLGGQEDTSRMIFSSPFK QKNMHLLVADYISTKYQMRENSMEAVVDALYALVSGKNGNYIFFFPSFLYLQKVYDLFKEKYPNIRLQKQETAMDEKQRE HFLEDFHAENVETLIGFCVLGGVFSEGVDLRGNRLVGAAVVGVGLAQLNHESDLIKDYYNETIGRGFDYAYQIPGMNKVL QAVGRVIRGESDRGVVLLIEERFSADRYRALFPTHWNHAKTVKTTDDISREVAGFWRNS >Mature_779_residues MRRVRISVRRLVEFVRRSGSIDNRMTNSDRALEGTKIHQLLQKEAGEEYAAEVRLNLERIVDGIAFSLDGRADGIINSRM IDEIKTTETPMDEITEDFRPLHWAQLICYGFMLAEKSDLAEVTLQLTYYQVVDKEVKQFQHVMSREELSVFVDDLLSQYA IWAKASAAWEMKRNKTIQELTFPYDNYRSGQRELAIAVYRTISSEESLFCEAPTGIGKTMSTLFPGIKAMGEGKTDKLFY FTAKTITRQVAEDALDEMRRKGLAARSVTITAKDKICFLDERKCEPDHCQFARGYYDRLNEALFDMLQSEEAITRQVVEG YARKYTLCPFELSLDVALFCDVIVCDYNYLFDPVVYLKRFFAEGPGKYTFLVDEVHNLVDRARSMYSATLKKSTVMQVKR GLDSKKNKRLLNAINVMNKEMIVLNKKLKDLEKTTYVQKSELVDWNAAVLKFTFVAKEWLPQNTQSELQVDVLDLYFESL RYTAIAEFYDERYVTQVTRNHRDLEIKQLCLDPAFLLSERLKLGSSSVLFSATLRPIDYYTNVLGGQEDTSRMIFSSPFK QKNMHLLVADYISTKYQMRENSMEAVVDALYALVSGKNGNYIFFFPSFLYLQKVYDLFKEKYPNIRLQKQETAMDEKQRE HFLEDFHAENVETLIGFCVLGGVFSEGVDLRGNRLVGAAVVGVGLAQLNHESDLIKDYYNETIGRGFDYAYQIPGMNKVL QAVGRVIRGESDRGVVLLIEERFSADRYRALFPTHWNHAKTVKTTDDISREVAGFWRNS
Specific function: Unknown
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010614 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 [H]
Pfam domain/function: PF06733 DEAD_2 [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 89847; Mature: 89847
Theoretical pI: Translated: 6.41; Mature: 6.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRVRISVRRLVEFVRRSGSIDNRMTNSDRALEGTKIHQLLQKEAGEEYAAEVRLNLERI CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH VDGIAFSLDGRADGIINSRMIDEIKTTETPMDEITEDFRPLHWAQLICYGFMLAEKSDLA HHHHHEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCHH EVTLQLTYYQVVDKEVKQFQHVMSREELSVFVDDLLSQYAIWAKASAAWEMKRNKTIQEL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH TFPYDNYRSGQRELAIAVYRTISSEESLFCEAPTGIGKTMSTLFPGIKAMGEGKTDKLFY CCCCHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCHHHHCCCCCCEEEE FTAKTITRQVAEDALDEMRRKGLAARSVTITAKDKICFLDERKCEPDHCQFARGYYDRLN EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCCCCHHHHHHHHHHHHH EALFDMLQSEEAITRQVVEGYARKYTLCPFELSLDVALFCDVIVCDYNYLFDPVVYLKRF HHHHHHHHHHHHHHHHHHHHHHHCEECCCCHHCCCHHHHHHHHHCCCHHHHHHHHHHHHH FAEGPGKYTFLVDEVHNLVDRARSMYSATLKKSTVMQVKRGLDSKKNKRLLNAINVMNKE HHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCH MIVLNKKLKDLEKTTYVQKSELVDWNAAVLKFTFVAKEWLPQNTQSELQVDVLDLYFESL HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH RYTAIAEFYDERYVTQVTRNHRDLEIKQLCLDPAFLLSERLKLGSSSVLFSATLRPIDYY HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHCCCCCEEEEHHCCHHHHH TNVLGGQEDTSRMIFSSPFKQKNMHLLVADYISTKYQMRENSMEAVVDALYALVSGKNGN HHHCCCCCCCCHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC YIFFFPSFLYLQKVYDLFKEKYPNIRLQKQETAMDEKQREHFLEDFHAENVETLIGFCVL EEEECHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH GGVFSEGVDLRGNRLVGAAVVGVGLAQLNHESDLIKDYYNETIGRGFDYAYQIPGMNKVL HHHHHCCCCCCCCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHH QAVGRVIRGESDRGVVLLIEERFSADRYRALFPTHWNHAKTVKTTDDISREVAGFWRNS HHHHHHHCCCCCCCEEEEECCCCCCCHHHEECCCCCCCCCCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MRRVRISVRRLVEFVRRSGSIDNRMTNSDRALEGTKIHQLLQKEAGEEYAAEVRLNLERI CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHH VDGIAFSLDGRADGIINSRMIDEIKTTETPMDEITEDFRPLHWAQLICYGFMLAEKSDLA HHHHHEEECCCCCCCHHHHHHHHHHCCCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCHH EVTLQLTYYQVVDKEVKQFQHVMSREELSVFVDDLLSQYAIWAKASAAWEMKRNKTIQEL HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH TFPYDNYRSGQRELAIAVYRTISSEESLFCEAPTGIGKTMSTLFPGIKAMGEGKTDKLFY CCCCHHCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHCCHHHHCCCCCCEEEE FTAKTITRQVAEDALDEMRRKGLAARSVTITAKDKICFLDERKCEPDHCQFARGYYDRLN EHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEECCCCCCCCHHHHHHHHHHHHH EALFDMLQSEEAITRQVVEGYARKYTLCPFELSLDVALFCDVIVCDYNYLFDPVVYLKRF HHHHHHHHHHHHHHHHHHHHHHHCEECCCCHHCCCHHHHHHHHHCCCHHHHHHHHHHHHH FAEGPGKYTFLVDEVHNLVDRARSMYSATLKKSTVMQVKRGLDSKKNKRLLNAINVMNKE HHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCH MIVLNKKLKDLEKTTYVQKSELVDWNAAVLKFTFVAKEWLPQNTQSELQVDVLDLYFESL HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH RYTAIAEFYDERYVTQVTRNHRDLEIKQLCLDPAFLLSERLKLGSSSVLFSATLRPIDYY HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHHHHHCCCCCEEEEHHCCHHHHH TNVLGGQEDTSRMIFSSPFKQKNMHLLVADYISTKYQMRENSMEAVVDALYALVSGKNGN HHHCCCCCCCCHHHHCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC YIFFFPSFLYLQKVYDLFKEKYPNIRLQKQETAMDEKQREHFLEDFHAENVETLIGFCVL EEEECHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH GGVFSEGVDLRGNRLVGAAVVGVGLAQLNHESDLIKDYYNETIGRGFDYAYQIPGMNKVL HHHHHCCCCCCCCEEHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHH QAVGRVIRGESDRGVVLLIEERFSADRYRALFPTHWNHAKTVKTTDDISREVAGFWRNS HHHHHHHCCCCCCCEEEEECCCCCCCHHHEECCCCCCCCCCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11029001 [H]