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The map label for this gene is yvfU [H]

Identifier: 225861819

GI number: 225861819

Start: 1854471

End: 1855070

Strand: Reverse

Name: yvfU [H]

Synonym: SPT_1981

Alternate gene names: 225861819

Gene position: 1855070-1854471 (Counterclockwise)

Preceding gene: 225861820

Following gene: 225861818

Centisome position: 87.83

GC content: 45.33

Gene sequence:

>600_bases
ATGAAAGTATTAGTCGCAGAAGATCAAAGTATGTTGCGAGATGCCATGTGTCAATTACTCACGCTTCAACCAGATGTGGA
GTCTGTCCTTCAAGCCAAGAATGGGCAAGAAGCAATCCAACTATTAGAAAAGGAGTCTGTAGATATCGCCATCCTTGACG
TAGAAATGCCTGTTAAGACAGGTCTTGAAGTCTTGGAGTGGATACGATCAGAAAGGCTTGAAACAAAGGTGGTTGTGGTG
ACGACCTTCAAGCGTGCTGGGTATTTTGAACGTGCGGTCAAGGCTGGAGTGGATGCTTATGTATTAAAGGAACGAAGCGT
TGCAGACCTCATGCAAACCTTGCACACCGTCCTCGAAGGACGCAAGGAGTATTCGCCTGAATTGATGGAAGTGGTGATGA
CCCGTCCCAATCCGTTGACAGAACAAGAGATTGCTGTCTTAAAGGGGATCGCCCGGGGCTTATCCAACCAAGAAATCGCA
GATCAGCTTTACCTCTCAAACGGAACTATTCGAAACTATGTCACCAATATTCTTTCAAAATTGGATGCTGGTAATCGAAC
AGAGGCAGCTAATATCGCAAAAGAATCTGGTTGGTTATGA

Upstream 100 bases:

>100_bases
CGAGATCGTGTTTTTCCATTTTCAGGAGAAGTAAGTGTAATCAGTCAGAAACATCCAACGGAAGTGCAAGTTCGACTACC
TTATAAGGAGAGAAACTAAG

Downstream 100 bases:

>100_bases
TGATATAATATTTTCATGAAGACTATGTGCTAAAATTGACGGTAGTGAATGGAACAATACCTATAGTAGATTGAAACTAG
AATAGTACACCTCTACTTCT

Product: response regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSERLETKVVVV
TTFKRAGYFERAVKAGVDAYVLKERSVADLMQTLHTVLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIA
DQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL

Sequences:

>Translated_199_residues
MKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSERLETKVVVV
TTFKRAGYFERAVKAGVDAYVLKERSVADLMQTLHTVLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIA
DQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL
>Mature_199_residues
MKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKTGLEVLEWIRSERLETKVVVV
TTFKRAGYFERAVKAGVDAYVLKERSVADLMQTLHTVLEGRKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIA
DQLYLSNGTIRNYVTNILSKLDAGNRTEAANIAKESGWL

Specific function: Member of the two-component regulatory system yvfT/yvfU [H]

COG id: COG2197

COG function: function code TK; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788521, Length=198, Percent_Identity=29.2929292929293, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1790102, Length=199, Percent_Identity=29.1457286432161, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI1787473, Length=199, Percent_Identity=33.1658291457286, Blast_Score=91, Evalue=7e-20,
Organism=Escherichia coli, GI1786747, Length=200, Percent_Identity=26, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1788712, Length=189, Percent_Identity=24.8677248677249, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1788222, Length=207, Percent_Identity=22.2222222222222, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR016032
- InterPro:   IPR001789
- InterPro:   IPR000792
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00196 GerE; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 22248; Mature: 22248

Theoretical pI: Translated: 4.65; Mature: 4.65

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS00622 HTH_LUXR_1 ; PS50043 HTH_LUXR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKT
CEEEECCCHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCHHH
GLEVLEWIRSERLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSVADLMQTLHTVLEG
HHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHC
RKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTNILSK
HHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHH
LDAGNRTEAANIAKESGWL
CCCCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKESVDIAILDVEMPVKT
CEEEECCCHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCHHH
GLEVLEWIRSERLETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSVADLMQTLHTVLEG
HHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHCCCHHHHHHHCCHHHHHHHHHHHHHC
RKEYSPELMEVVMTRPNPLTEQEIAVLKGIARGLSNQEIADQLYLSNGTIRNYVTNILSK
HHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHH
LDAGNRTEAANIAKESGWL
CCCCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]