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The map label for this gene is lipO [H]

Identifier: 225861599

GI number: 225861599

Start: 1635336

End: 1636952

Strand: Reverse

Name: lipO [H]

Synonym: SPT_1720

Alternate gene names: 225861599

Gene position: 1636952-1635336 (Counterclockwise)

Preceding gene: 225861600

Following gene: 225861598

Centisome position: 77.5

GC content: 37.29

Gene sequence:

>1617_bases
ATGAAATTCAAAACATTCTCAAAATCAGCAGTTTTGTTGACAGCTAGTTTAGCAGTACTTGCAGCCTGTGGCTCAAAAAA
TACAGCTTCAAGTCCAGATTATAAGTTGGAAGGTGTAACATTCCCGCTTCAAGAAAAGAAAACATTGAAGTTTATGACAG
CCAGTTCACCGTTATCTCCTAAAGACCCAAATGAAAAGTTAATTTTACAACGTTTGGAGAAGGAAACTGGCGTTCATATT
GACTGGACCAACTACCAATCCGACTTTGCAGAAAAACGTAACTTGGATATTTCTAGTGGTGATTTACCAGATGCTATCCA
CAACGACGGAGCTTCAGATGTGGACTTGATGAACTGGGCTAAAAAAGGTGTTATTATTCCAGTTGAAGATTTGATTGATA
AATACATGCCAAATCTTAAGAAAATTTTGGATGAGAAACCAGAGTACAAGGCCTTGATGACAGCACCTGATGGGCACATT
TACTCATTCCCATGGATTGAAGAGCTTGGAGATGGTAAAGAGTCTATTCACAGCGTCAACGATATGGCTTGGATTAACAA
AGATTGGCTTAAGAAACTTGGTCTTGAAATGCCAAAAACTACTGATGATTTGATTAAAGTCCTAGAAGCTTTCAAAAACG
GGGATCCAAATGGAAATGGAGAGGCTGATGAAATTCCATTTACATTTATTAGTGGTAACGGAAACGAAGATTTTAAATTC
CTATTTGCTGCATTTGATATAGGGGATAACGATGATCATTTAGTAGTAGGAAATGATGGCAAAGTTGACTTCACAGCAGA
TAACGATAACTATAAAGAAGGTGTCAAATTTATCCGTCAATTGCAAGAAAAAGGCTTGATTGATAAAGAAGCTTTCGAAC
ATGATTGGAATAGTTACATTGCTAAAGGTCATGATCAGAAATTTGGTGTTTACTTTACATGGGATAAGAATAATGTTACT
GGAAGTAACGAAAGTTATGATGTTTTACCAGTACTTGCTGGACCAAGTGGTCAAAAACACGTAGCTCGTACAAACGGTAT
GGGATTTGCACGTGACAAGATGGTTATTACCAGTGTAAACAAAAACCTAGAATTGACAGCTAAATGGATTGATGCACAAT
ACGCTCCACTCCAATCTGTGCAAAATAACTGGGGAACTTATGGAGATGACAAACAACAAAACATCTTTGAATTGGATCAA
GCGTCAAATAGTCTAAAACACTTACCACTAAACGGAACTGCACCAGCAGAACTTCGTCAAAAGACTGAAGTAGGAGGACC
ACTAGCTATTCTAGATTCATACTATGGTAAAGTGACAACCATGCCAGATGATGCCAAATGGCGTTTGGATCTTATCAAAG
AATATTATGTTCCTTACATGAGCAATGACAATAACTATCCAAGAGTCTTTATGACACAGGAAGATTTGGACAAGATTGCC
CATATCGAGGCAGATATGAATGACTATATCTACCGTAAACGTGCTGAATGGATTGTAAATGGCAATATTGATACTGAGTG
GGATGATTACAAGAAAGAACTTGAAAAATACGGACTTTCTGATTACCTCGCTATTAAACAAAAATACTACGACCAATACC
AAGCAAACAAAAACTAG

Upstream 100 bases:

>100_bases
TTGATTGTTATGTATCCATTCTTCCAAAAATACTTTGATAAAGGAATTATGGCTGGTTCACTTAAAGGATAAAAAAAGAA
AAAATAAAAGGAGTTTTCTC

Downstream 100 bases:

>100_bases
AGGTTGATTATGGGAGATAAGAAATACACAGTAGAAAAAGCCAATCGTTTTATAGCAGAAAATAAACATCTCGTTAATAC
TCAATATAAGCCTGAAGAAC

Product: ABC transporter, substrate-binding protein

Products: NA

Alternate protein names: Lipoprotein lplA [H]

Number of amino acids: Translated: 538; Mature: 538

Protein sequence:

>538_residues
MKFKTFSKSAVLLTASLAVLAACGSKNTASSPDYKLEGVTFPLQEKKTLKFMTASSPLSPKDPNEKLILQRLEKETGVHI
DWTNYQSDFAEKRNLDISSGDLPDAIHNDGASDVDLMNWAKKGVIIPVEDLIDKYMPNLKKILDEKPEYKALMTAPDGHI
YSFPWIEELGDGKESIHSVNDMAWINKDWLKKLGLEMPKTTDDLIKVLEAFKNGDPNGNGEADEIPFTFISGNGNEDFKF
LFAAFDIGDNDDHLVVGNDGKVDFTADNDNYKEGVKFIRQLQEKGLIDKEAFEHDWNSYIAKGHDQKFGVYFTWDKNNVT
GSNESYDVLPVLAGPSGQKHVARTNGMGFARDKMVITSVNKNLELTAKWIDAQYAPLQSVQNNWGTYGDDKQQNIFELDQ
ASNSLKHLPLNGTAPAELRQKTEVGGPLAILDSYYGKVTTMPDDAKWRLDLIKEYYVPYMSNDNNYPRVFMTQEDLDKIA
HIEADMNDYIYRKRAEWIVNGNIDTEWDDYKKELEKYGLSDYLAIKQKYYDQYQANKN

Sequences:

>Translated_538_residues
MKFKTFSKSAVLLTASLAVLAACGSKNTASSPDYKLEGVTFPLQEKKTLKFMTASSPLSPKDPNEKLILQRLEKETGVHI
DWTNYQSDFAEKRNLDISSGDLPDAIHNDGASDVDLMNWAKKGVIIPVEDLIDKYMPNLKKILDEKPEYKALMTAPDGHI
YSFPWIEELGDGKESIHSVNDMAWINKDWLKKLGLEMPKTTDDLIKVLEAFKNGDPNGNGEADEIPFTFISGNGNEDFKF
LFAAFDIGDNDDHLVVGNDGKVDFTADNDNYKEGVKFIRQLQEKGLIDKEAFEHDWNSYIAKGHDQKFGVYFTWDKNNVT
GSNESYDVLPVLAGPSGQKHVARTNGMGFARDKMVITSVNKNLELTAKWIDAQYAPLQSVQNNWGTYGDDKQQNIFELDQ
ASNSLKHLPLNGTAPAELRQKTEVGGPLAILDSYYGKVTTMPDDAKWRLDLIKEYYVPYMSNDNNYPRVFMTQEDLDKIA
HIEADMNDYIYRKRAEWIVNGNIDTEWDDYKKELEKYGLSDYLAIKQKYYDQYQANKN
>Mature_538_residues
MKFKTFSKSAVLLTASLAVLAACGSKNTASSPDYKLEGVTFPLQEKKTLKFMTASSPLSPKDPNEKLILQRLEKETGVHI
DWTNYQSDFAEKRNLDISSGDLPDAIHNDGASDVDLMNWAKKGVIIPVEDLIDKYMPNLKKILDEKPEYKALMTAPDGHI
YSFPWIEELGDGKESIHSVNDMAWINKDWLKKLGLEMPKTTDDLIKVLEAFKNGDPNGNGEADEIPFTFISGNGNEDFKF
LFAAFDIGDNDDHLVVGNDGKVDFTADNDNYKEGVKFIRQLQEKGLIDKEAFEHDWNSYIAKGHDQKFGVYFTWDKNNVT
GSNESYDVLPVLAGPSGQKHVARTNGMGFARDKMVITSVNKNLELTAKWIDAQYAPLQSVQNNWGTYGDDKQQNIFELDQ
ASNSLKHLPLNGTAPAELRQKTEVGGPLAILDSYYGKVTTMPDDAKWRLDLIKEYYVPYMSNDNNYPRVFMTQEDLDKIA
HIEADMNDYIYRKRAEWIVNGNIDTEWDDYKKELEKYGLSDYLAIKQKYYDQYQANKN

Specific function: Unknown

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 61080; Mature: 61080

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00268 CECROPIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFKTFSKSAVLLTASLAVLAACGSKNTASSPDYKLEGVTFPLQEKKTLKFMTASSPLSP
CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECCEEECCCCCCEEEEEECCCCCCC
KDPNEKLILQRLEKETGVHIDWTNYQSDFAEKRNLDISSGDLPDAIHNDGASDVDLMNWA
CCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHH
KKGVIIPVEDLIDKYMPNLKKILDEKPEYKALMTAPDGHIYSFPWIEELGDGKESIHSVN
HCCEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEECCCHHHHCCCHHHHHHHH
DMAWINKDWLKKLGLEMPKTTDDLIKVLEAFKNGDPNGNGEADEIPFTFISGNGNEDFKF
HHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCEEE
LFAAFDIGDNDDHLVVGNDGKVDFTADNDNYKEGVKFIRQLQEKGLIDKEAFEHDWNSYI
EEEEEECCCCCCEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
AKGHDQKFGVYFTWDKNNVTGSNESYDVLPVLAGPSGQKHVARTNGMGFARDKMVITSVN
HCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCHHHCCCCCCCCCCEEEEECC
KNLELTAKWIDAQYAPLQSVQNNWGTYGDDKQQNIFELDQASNSLKHLPLNGTAPAELRQ
CCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCHHHHHH
KTEVGGPLAILDSYYGKVTTMPDDAKWRLDLIKEYYVPYMSNDNNYPRVFMTQEDLDKIA
HHHCCCCHHHHHHHCCEEECCCCCCHHHHHHHHHHCCCEECCCCCCCEEEEEHHHHHHHH
HIEADMNDYIYRKRAEWIVNGNIDTEWDDYKKELEKYGLSDYLAIKQKYYDQYQANKN
HHHCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MKFKTFSKSAVLLTASLAVLAACGSKNTASSPDYKLEGVTFPLQEKKTLKFMTASSPLSP
CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECCEEECCCCCCEEEEEECCCCCCC
KDPNEKLILQRLEKETGVHIDWTNYQSDFAEKRNLDISSGDLPDAIHNDGASDVDLMNWA
CCCCHHHHHHHHHHHCCCEEEECCCHHHHHHHHCCCCCCCCCCHHHHCCCCCCHHHHHHH
KKGVIIPVEDLIDKYMPNLKKILDEKPEYKALMTAPDGHIYSFPWIEELGDGKESIHSVN
HCCEEEEHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCEEECCCHHHHCCCHHHHHHHH
DMAWINKDWLKKLGLEMPKTTDDLIKVLEAFKNGDPNGNGEADEIPFTFISGNGNEDFKF
HHHHCCHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCCEEE
LFAAFDIGDNDDHLVVGNDGKVDFTADNDNYKEGVKFIRQLQEKGLIDKEAFEHDWNSYI
EEEEEECCCCCCEEEECCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
AKGHDQKFGVYFTWDKNNVTGSNESYDVLPVLAGPSGQKHVARTNGMGFARDKMVITSVN
HCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCCCHHHCCCCCCCCCCEEEEECC
KNLELTAKWIDAQYAPLQSVQNNWGTYGDDKQQNIFELDQASNSLKHLPLNGTAPAELRQ
CCCEEEEEECCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCHHHHHH
KTEVGGPLAILDSYYGKVTTMPDDAKWRLDLIKEYYVPYMSNDNNYPRVFMTQEDLDKIA
HHHCCCCHHHHHHHCCEEECCCCCCHHHHHHHHHHCCCEECCCCCCCEEEEEHHHHHHHH
HIEADMNDYIYRKRAEWIVNGNIDTEWDDYKKELEKYGLSDYLAIKQKYYDQYQANKN
HHHCCHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7921237; 9384377 [H]