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The map label for this gene is licD [H]

Identifier: 225860895

GI number: 225860895

Start: 900084

End: 900893

Strand: Reverse

Name: licD [H]

Synonym: SPT_0953

Alternate gene names: 225860895

Gene position: 900893-900084 (Counterclockwise)

Preceding gene: 225860896

Following gene: 225860888

Centisome position: 42.65

GC content: 37.41

Gene sequence:

>810_bases
ATGCAATATTTAGAAAAAAAAGAAATTAAAGAAATTCAACTAGCCCTGCTGGACTATATTGATGAGACTTGTAAGAAACA
TGATATTCCTTATTTTCTCAGTTATGGAACCATGCTTGGAGCCATCCGCCACAAAGGTATGATTCCTTGGGATGATGATA
TTGATATTTCCCTTTATCGTGAGGATTATGAGCGTTTACTGAAGATTATTGAAGAAGAAAATCACCATCGCTACAAGGTT
CTTTCCTACGATACATCTTCTTGGTACTTCCATAATTTCGCATCGATTTTGGACACTTCTACTGTTATAGAAGACCATGT
TAAGTACAAGCGTCATGATACCAGCCTTTTCATCGATGTCTTCCCAATTGATCGATTTACAGACTTGAGCATTGTCGACA
AGAGCTATAAGTATGTGGCCCTTCGTCAACTAGCTTATATCAAAAAATCACGAGCAGTTCACGGTGATAGCAAACTAAAA
GATTTTCTTAGATTATGTAGCTGGTACGCTCTCCGATTTGTCAATCCTCGCTACTTTTACAAGAAAATTGATCAACTAGT
CAAAAATGCTGTAACCAACACTCCTCAATATGAAGGAGGAGTTGGGATCGGTAAGGAAGGGATGAAAGAAATCTTCCCAG
TTGATACCTTTAAAGAACTGATTTTAACTGAGTTTGAGGGCCGTATGTTGCCTGTTCCCAAAAAATATGACCAATTTTTA
ACCCAGATGTATGGCGATTATATGACACCACCATCAAAAGAAATGCAAGAGTGGTATAGTCATAGCATTAAAGCTTATCG
CAAAAACTGA

Upstream 100 bases:

>100_bases
ACTATTTTGACACAATTTTATGGAGATTATATGACCCTACCACCAGAAGAAAAACGCTTCTACAGTCATGAATTTCACGC
TTATAAATTGGAGGATTAGG

Downstream 100 bases:

>100_bases
TTGAGGGGGATTATACAAACTACTAAGATAGAGGTTATTCAAAAACATAATTTTAGTAGAAAATGAAATACATATTCCCA
CAATAAAACGCATCATATCA

Product: LicD Protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 269; Mature: 269

Protein sequence:

>269_residues
MQYLEKKEIKEIQLALLDYIDETCKKHDIPYFLSYGTMLGAIRHKGMIPWDDDIDISLYREDYERLLKIIEEENHHRYKV
LSYDTSSWYFHNFASILDTSTVIEDHVKYKRHDTSLFIDVFPIDRFTDLSIVDKSYKYVALRQLAYIKKSRAVHGDSKLK
DFLRLCSWYALRFVNPRYFYKKIDQLVKNAVTNTPQYEGGVGIGKEGMKEIFPVDTFKELILTEFEGRMLPVPKKYDQFL
TQMYGDYMTPPSKEMQEWYSHSIKAYRKN

Sequences:

>Translated_269_residues
MQYLEKKEIKEIQLALLDYIDETCKKHDIPYFLSYGTMLGAIRHKGMIPWDDDIDISLYREDYERLLKIIEEENHHRYKV
LSYDTSSWYFHNFASILDTSTVIEDHVKYKRHDTSLFIDVFPIDRFTDLSIVDKSYKYVALRQLAYIKKSRAVHGDSKLK
DFLRLCSWYALRFVNPRYFYKKIDQLVKNAVTNTPQYEGGVGIGKEGMKEIFPVDTFKELILTEFEGRMLPVPKKYDQFL
TQMYGDYMTPPSKEMQEWYSHSIKAYRKN
>Mature_269_residues
MQYLEKKEIKEIQLALLDYIDETCKKHDIPYFLSYGTMLGAIRHKGMIPWDDDIDISLYREDYERLLKIIEEENHHRYKV
LSYDTSSWYFHNFASILDTSTVIEDHVKYKRHDTSLFIDVFPIDRFTDLSIVDKSYKYVALRQLAYIKKSRAVHGDSKLK
DFLRLCSWYALRFVNPRYFYKKIDQLVKNAVTNTPQYEGGVGIGKEGMKEIFPVDTFKELILTEFEGRMLPVPKKYDQFL
TQMYGDYMTPPSKEMQEWYSHSIKAYRKN

Specific function: Transfers phosphorylcholine (ChoP) from choline diphosphonucleoside to the lipopolysaccharide (LPS) [H]

COG id: COG3475

COG function: function code M; LPS biosynthesis protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the licD transferase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007074 [H]

Pfam domain/function: PF04991 LicD [H]

EC number: NA

Molecular weight: Translated: 32140; Mature: 32140

Theoretical pI: Translated: 7.72; Mature: 7.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2479481; 7542800; 10632893 [H]