| Definition | Streptococcus pneumoniae Taiwan19F-14, complete genome. |
|---|---|
| Accession | NC_012469 |
| Length | 2,112,148 |
Click here to switch to the map view.
The map label for this gene is yrrC [H]
Identifier: 225860425
GI number: 225860425
Start: 405125
End: 407491
Strand: Reverse
Name: yrrC [H]
Synonym: SPT_0439
Alternate gene names: 225860425
Gene position: 407491-405125 (Counterclockwise)
Preceding gene: 225860426
Following gene: 225860411
Centisome position: 19.29
GC content: 44.95
Gene sequence:
>2367_bases ATGGAAGTTTATTTTTCAGGAACTATTGAACGGATTATTTTTGAAAATCCCAGCAATTTTTATCGCATCCTCCTCCTAGA AATCGACGATACGGACGCAGAGGATTTTGATGATTTTGAAATCATTGTCACAGGAACCATGGCTGATGTAATTGAGGGCG AAGACTATACTTTTTGGGGGCAAATTGTCCAGCACTCCAAGTATGGAGAACAACTGCAAATCAGTCGTTATGATCGCGCA AAACCAACTAGTAAGGGCTTGGTCAAGTACTTTTCAAGTAGCCATTTCAAGGGGATTGGTCTCAAGACAGCTCAGAAAAT CGTGGATACCTATGGCGAAAATACCATTGACGAAATTTTGCAACACCCAGAAAAGTTAGAAGGCATCGTAGGACTCTCTG CCAAAAATCGCGAGGCTTTCGTCTCCACTCTCCGTCTCAACTACGGAACGGAGATGATTTTGGCCAAACTAGCCAACTAC GGCATTCCCAACAAACTAGCCTTTCAGATTCAAGACTTTTACAAGGAAGAAACCCTTGATGTGGTTGAAAATTATCCCTA CCAGCTGGTTGAGGATATCAAGGGTTTGGGCTTTACCATTGCTGACCAACTAGCTGAGGAACTAGGCATCGAAAGTCAGG CTCCTGAACGCTTCCGCGCCGGTCTAGTTCACAGTCTTTTTCAGGCCTGTATGGAAACAGGGGACACCTATGTTGAAGTA CGGGATTTGCTGGAACAAACCCTTACTCTCCTTGAGTCTTCCCGTCCCGTGGAACTAGACCCCAGCCAAGTTGCCCAAGA GCTCTCCTACCTGATCGAAGAAGACAAGGTTCAGCAGATTGATACCAAGATCTTTGACAACAGCCTCTTTTTCGCTGAGG AAGGCATCCGCAGTCACTTGGTTCGTATCCTTGAAAAAGGAAAACAGAAGAGTCATGATTTAGAAACCATTCAAAAACAT ATCACTACTATCGAGGAAGAGCTGGGAATTGAGTATGATAACATTCAAAAACAGGCTATCTGTGATGCTATCCAGAATAA GGTCTTTATCCTGACAGGTGGACCTGGTACTGGTAAGACAACTGTTATCAATGGGATCATCGCTGTTTACGCCCTGTTAG AGGGACTTGACCTCAGGAAGAAAAGCAACCTGCCCATTCTTCTTGCTGCTCCAACTGGACGAGCCGCTCGTCGCATGAAT GAATTGACAGGCTTGCCTAGCGCGACCATACACCGCCACTTGGGAATGACAGGTGACGATGATACCAGTCATCTGGAAGA TTACCTAGATACTGACTTTATCATCGTGGATGAATTCTCTATGGTGGATACTTGGCTGGCCAATCAACTCTTCTCCAATA TCTCTTCTAACAGTAAGATCCTCATCGTAGGTGACAGTGATCAGCTACCTTCTGTCAGTCCTGGACAGGTTCTAGCGGAT CTGCTTCATATTCCTTTGATTCCTCAGACTCGCTTGGAAAAAATTTATCGACAAAGCGAAGAATCAACCATCGTCACCCT AGCTAGTCAGATTCGACAGGGCATCTTGCCAGCTGATTTCACCCAAAAAAAAGCTGACCGTTCCTACTTTGAAATTGCTA GTGGCCATATTCCTGCCACCATTGAAAAAATCTTAGGTGCCGCCCTCAGAAATGGTATTCCTGCCCGTGATATCCAAGTT CTGGCTCCTATGTACCGAGGGACGGCAGGGATTGATGCTATCAATCAGCTCATGCAAGACCTGCTCAATCCCCCACAAAA AGATCAACTCAGTTTTGAAGCTCCTCAGTGCCACTATCGTAAGGGAGACAAGGTCATTCATTTGGTTAACGATACTGAAA TCAATGTCTTTAATGGGGATTTAGGAGCTATCACAGACCTGATTCCTGGTAAATACACCGAATCGAAACAAGACGAGATT GTCATTGATTTTGATGGTAATGAAGTCTCTTACCCCCGTAACGAATGGTACAAGATTCGCTTGGCCTATGCCATGAGTAT TCATAAGTCTCAGGGAAGTGAGTTCCCAGTTGTCATCCTACCGATTACTAGTGCTAGCCGACGTATGCTGGAGCGAAATC TCATCTACACAGCCATTACACGTGCCAAAAGCAAACTCATCTTACTAGGCGAATTACAAGCCTTCGACCATGCTACCCAA CACATCGGAACTGCCCGAAAAACCTATCTGGTTGAACGCTTCAGTGATCTACTGAAGAATGTTGAAGAAAAGCAACAAGC TGTCTCTGAAACAGTCACATCAAGTGCCTCTGAACAATCCTACATCCTAACCGAAGAAAACTGGGACCGCATCCCAGCCA TGATTGGGATTACAGACACAGACCTCAAAGAGATTTTTGGAAAATAG
Upstream 100 bases:
>100_bases TCTCAGCCTCTTCTTCTATCGTGAGAAAATGATTGGTAACTATCTAAACTTACCAGAACAGAAACACCTCAACTCTCACC TATTCATGCAAAGGAATTTT
Downstream 100 bases:
>100_bases TGCATCAGAAAACCCACCTGAATTGGTGGGTTTTCTGTTTATTAAGATTATTTTACTGTTGCTGTGCTTGTAATCAATTC AACAGCTTTTTTGATTGTGA
Product: helicase, RecD/TraA family
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 788; Mature: 788
Protein sequence:
>788_residues MEVYFSGTIERIIFENPSNFYRILLLEIDDTDAEDFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGEQLQISRYDRA KPTSKGLVKYFSSSHFKGIGLKTAQKIVDTYGENTIDEILQHPEKLEGIVGLSAKNREAFVSTLRLNYGTEMILAKLANY GIPNKLAFQIQDFYKEETLDVVENYPYQLVEDIKGLGFTIADQLAEELGIESQAPERFRAGLVHSLFQACMETGDTYVEV RDLLEQTLTLLESSRPVELDPSQVAQELSYLIEEDKVQQIDTKIFDNSLFFAEEGIRSHLVRILEKGKQKSHDLETIQKH ITTIEEELGIEYDNIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDLRKKSNLPILLAAPTGRAARRMN ELTGLPSATIHRHLGMTGDDDTSHLEDYLDTDFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD LLHIPLIPQTRLEKIYRQSEESTIVTLASQIRQGILPADFTQKKADRSYFEIASGHIPATIEKILGAALRNGIPARDIQV LAPMYRGTAGIDAINQLMQDLLNPPQKDQLSFEAPQCHYRKGDKVIHLVNDTEINVFNGDLGAITDLIPGKYTESKQDEI VIDFDGNEVSYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASRRMLERNLIYTAITRAKSKLILLGELQAFDHATQ HIGTARKTYLVERFSDLLKNVEEKQQAVSETVTSSASEQSYILTEENWDRIPAMIGITDTDLKEIFGK
Sequences:
>Translated_788_residues MEVYFSGTIERIIFENPSNFYRILLLEIDDTDAEDFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGEQLQISRYDRA KPTSKGLVKYFSSSHFKGIGLKTAQKIVDTYGENTIDEILQHPEKLEGIVGLSAKNREAFVSTLRLNYGTEMILAKLANY GIPNKLAFQIQDFYKEETLDVVENYPYQLVEDIKGLGFTIADQLAEELGIESQAPERFRAGLVHSLFQACMETGDTYVEV RDLLEQTLTLLESSRPVELDPSQVAQELSYLIEEDKVQQIDTKIFDNSLFFAEEGIRSHLVRILEKGKQKSHDLETIQKH ITTIEEELGIEYDNIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDLRKKSNLPILLAAPTGRAARRMN ELTGLPSATIHRHLGMTGDDDTSHLEDYLDTDFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD LLHIPLIPQTRLEKIYRQSEESTIVTLASQIRQGILPADFTQKKADRSYFEIASGHIPATIEKILGAALRNGIPARDIQV LAPMYRGTAGIDAINQLMQDLLNPPQKDQLSFEAPQCHYRKGDKVIHLVNDTEINVFNGDLGAITDLIPGKYTESKQDEI VIDFDGNEVSYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASRRMLERNLIYTAITRAKSKLILLGELQAFDHATQ HIGTARKTYLVERFSDLLKNVEEKQQAVSETVTSSASEQSYILTEENWDRIPAMIGITDTDLKEIFGK >Mature_788_residues MEVYFSGTIERIIFENPSNFYRILLLEIDDTDAEDFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGEQLQISRYDRA KPTSKGLVKYFSSSHFKGIGLKTAQKIVDTYGENTIDEILQHPEKLEGIVGLSAKNREAFVSTLRLNYGTEMILAKLANY GIPNKLAFQIQDFYKEETLDVVENYPYQLVEDIKGLGFTIADQLAEELGIESQAPERFRAGLVHSLFQACMETGDTYVEV RDLLEQTLTLLESSRPVELDPSQVAQELSYLIEEDKVQQIDTKIFDNSLFFAEEGIRSHLVRILEKGKQKSHDLETIQKH ITTIEEELGIEYDNIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDLRKKSNLPILLAAPTGRAARRMN ELTGLPSATIHRHLGMTGDDDTSHLEDYLDTDFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD LLHIPLIPQTRLEKIYRQSEESTIVTLASQIRQGILPADFTQKKADRSYFEIASGHIPATIEKILGAALRNGIPARDIQV LAPMYRGTAGIDAINQLMQDLLNPPQKDQLSFEAPQCHYRKGDKVIHLVNDTEINVFNGDLGAITDLIPGKYTESKQDEI VIDFDGNEVSYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSASRRMLERNLIYTAITRAKSKLILLGELQAFDHATQ HIGTARKTYLVERFSDLLKNVEEKQQAVSETVTSSASEQSYILTEENWDRIPAMIGITDTDLKEIFGK
Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi
COG id: COG0507
COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1789182, Length=472, Percent_Identity=27.7542372881356, Blast_Score=114, Evalue=2e-26,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR006345 [H]
Pfam domain/function: NA
EC number: 3.1.11.5
Molecular weight: Translated: 88594; Mature: 88594
Theoretical pI: Translated: 4.59; Mature: 4.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEVYFSGTIERIIFENPSNFYRILLLEIDDTDAEDFDDFEIIVTGTMADVIEGEDYTFWG CEEEECCCEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCHHHHHCCCCCHHHH QIVQHSKYGEQLQISRYDRAKPTSKGLVKYFSSSHFKGIGLKTAQKIVDTYGENTIDEIL HHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHH QHPEKLEGIVGLSAKNREAFVSTLRLNYGTEMILAKLANYGIPNKLAFQIQDFYKEETLD HCHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH VVENYPYQLVEDIKGLGFTIADQLAEELGIESQAPERFRAGLVHSLFQACMETGDTYVEV HHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH RDLLEQTLTLLESSRPVELDPSQVAQELSYLIEEDKVQQIDTKIFDNSLFFAEEGIRSHL HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH VRILEKGKQKSHDLETIQKHITTIEEELGIEYDNIQKQAICDAIQNKVFILTGGPGTGKT HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCH TVINGIIAVYALLEGLDLRKKSNLPILLAAPTGRAARRMNELTGLPSATIHRHLGMTGDD HHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCHHHHHHCCCCCCC DTSHLEDYLDTDFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD CHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHH LLHIPLIPQTRLEKIYRQSEESTIVTLASQIRQGILPADFTQKKADRSYFEIASGHIPAT HHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHCCCCCHH IEKILGAALRNGIPARDIQVLAPMYRGTAGIDAINQLMQDLLNPPQKDQLSFEAPQCHYR HHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC KGDKVIHLVNDTEINVFNGDLGAITDLIPGKYTESKQDEIVIDFDGNEVSYPRNEWYKIR CCCCEEEEECCCEEEEECCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEE LAYAMSIHKSQGSEFPVVILPITSASRRMLERNLIYTAITRAKSKLILLGELQAFDHATQ EEEEEHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHH HIGTARKTYLVERFSDLLKNVEEKQQAVSETVTSSASEQSYILTEENWDRIPAMIGITDT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEECCCCH DLKEIFGK HHHHHHCC >Mature Secondary Structure MEVYFSGTIERIIFENPSNFYRILLLEIDDTDAEDFDDFEIIVTGTMADVIEGEDYTFWG CEEEECCCEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCHHHHHCCCCCHHHH QIVQHSKYGEQLQISRYDRAKPTSKGLVKYFSSSHFKGIGLKTAQKIVDTYGENTIDEIL HHHHHHCCCCCEEECCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHH QHPEKLEGIVGLSAKNREAFVSTLRLNYGTEMILAKLANYGIPNKLAFQIQDFYKEETLD HCHHHHHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH VVENYPYQLVEDIKGLGFTIADQLAEELGIESQAPERFRAGLVHSLFQACMETGDTYVEV HHHCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH RDLLEQTLTLLESSRPVELDPSQVAQELSYLIEEDKVQQIDTKIFDNSLFFAEEGIRSHL HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH VRILEKGKQKSHDLETIQKHITTIEEELGIEYDNIQKQAICDAIQNKVFILTGGPGTGKT HHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCH TVINGIIAVYALLEGLDLRKKSNLPILLAAPTGRAARRMNELTGLPSATIHRHLGMTGDD HHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCHHHHHHCCCCCCC DTSHLEDYLDTDFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD CHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHH LLHIPLIPQTRLEKIYRQSEESTIVTLASQIRQGILPADFTQKKADRSYFEIASGHIPAT HHHCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHCCHHHHHHCCCCCHH IEKILGAALRNGIPARDIQVLAPMYRGTAGIDAINQLMQDLLNPPQKDQLSFEAPQCHYR HHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC KGDKVIHLVNDTEINVFNGDLGAITDLIPGKYTESKQDEIVIDFDGNEVSYPRNEWYKIR CCCCEEEEECCCEEEEECCCHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEE LAYAMSIHKSQGSEFPVVILPITSASRRMLERNLIYTAITRAKSKLILLGELQAFDHATQ EEEEEHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHH HIGTARKTYLVERFSDLLKNVEEKQQAVSETVTSSASEQSYILTEENWDRIPAMIGITDT HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCEEECCCCH DLKEIFGK HHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]