Click here to switch to the map view.

The map label for this gene is 225860333

Identifier: 225860333

GI number: 225860333

Start: 307238

End: 307507

Strand: Reverse

Name: 225860333

Synonym: SPT_0343

Alternate gene names: NA

Gene position: 307507-307238 (Counterclockwise)

Preceding gene: 225860334

Following gene: 225860332

Centisome position: 14.56

GC content: 32.96

Gene sequence:

>270_bases
ATGCAAGTTATTCTACCAACAGAACAAGTTCAAGAAATACAGTCGATGATTACTAATCTCTTGCAAAATGAAATTTCTCA
TTTCAAAGAAGATTTAGGTTTAGATAGTCCTTACCTTAACAAGGGGCAAACTTGCAAATATCTAGGGATATCTAACAATA
CATTAGATGGCTGGATACAAAAGGGGCTACCCGTTATTAAAATTGGTAAGACTGTCCGTTTCAATAAAAATGAGATTGAT
AAATGGCTTTGTAGAAAAGCTATGCTATAA

Upstream 100 bases:

>100_bases
TATGAAAGCAACTATATTAGCAAAGTATTTCGAAAAGGACACTTAATTGACAATAAAGTAAAATACAAAAAAATAAAGTT
AAGTAAGGAGTAAGGAAAAA

Downstream 100 bases:

>100_bases
TATCTCTAATGATATATCCTGACTCGTAAAAGGAGAACATCATGACAGTTACAAAAACAAATAGTAACACTTACAATCTT
AAAGTGTATATACCTAAAGA

Product: transcriptional regulator, AlpA family

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 89; Mature: 89

Protein sequence:

>89_residues
MQVILPTEQVQEIQSMITNLLQNEISHFKEDLGLDSPYLNKGQTCKYLGISNNTLDGWIQKGLPVIKIGKTVRFNKNEID
KWLCRKAML

Sequences:

>Translated_89_residues
MQVILPTEQVQEIQSMITNLLQNEISHFKEDLGLDSPYLNKGQTCKYLGISNNTLDGWIQKGLPVIKIGKTVRFNKNEID
KWLCRKAML
>Mature_89_residues
MQVILPTEQVQEIQSMITNLLQNEISHFKEDLGLDSPYLNKGQTCKYLGISNNTLDGWIQKGLPVIKIGKTVRFNKNEID
KWLCRKAML

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10234; Mature: 10234

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQVILPTEQVQEIQSMITNLLQNEISHFKEDLGLDSPYLNKGQTCKYLGISNNTLDGWIQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHH
KGLPVIKIGKTVRFNKNEIDKWLCRKAML
CCCCEEEECCEECCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MQVILPTEQVQEIQSMITNLLQNEISHFKEDLGLDSPYLNKGQTCKYLGISNNTLDGWIQ
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHHHH
KGLPVIKIGKTVRFNKNEIDKWLCRKAML
CCCCEEEECCEECCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA