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The map label for this gene is ykfC [H]

Identifier: 225859951

GI number: 225859951

Start: 2122502

End: 2123779

Strand: Reverse

Name: ykfC [H]

Synonym: SP70585_2307

Alternate gene names: 225859951

Gene position: 2123779-2122502 (Counterclockwise)

Preceding gene: 225859953

Following gene: 225859950

Centisome position: 97.21

GC content: 39.51

Gene sequence:

>1278_bases
ATGTCAAAACTGCTAGATAAGATATTATCACGCGAAAATATGCTGGAAGCCTACAATCAAGTAAAATCCAATAAAGGCTC
AGCTGGGATTGATGGAATGACTATCGAAGAGATGGATAATTATCTCAGACAAAACTGGCGCTTGACTAAGGAACTGATAA
AACAGAGAAAATATAAGCCTCAACCAGTTCTTAAAGTTGAGATACCTAAACCAGACGGAGGCATCCGTCAACTAGGAATT
CCAACAGTTATGGATAGAATGATTCAACAGGCCATTGTCCAAGTCATGAGCCCCATTTGTGAACCCCATTTCTCAGATAC
GAGTTATGGTTTCAGACCAAATAGGTCATGTGAAAAAGCCATCATGAAGCTCTTAGAATACTTAAATGACGGCTATGAGT
GGATAGTGGATATAGACCTAGAGAAATTTTTCGATACAGTTCCTCAAGATAGATTGATGTCCTTAGTACATAACATTATC
GAAGACGGAGATACGGAATCCTTGATTCGTAAGTATCTTCATTCAGGTGTTATCATTAATGGTCAACGTTATAAAACACT
AGTTGGTACACCACAGGGAGGAAATTTATCTCCTCTCTTATCCAATATCATGCTTAATGAATTGGACAAGGAATTAGAAA
AGAGGGGACTTCGATTTGTGCGCTACGCAGATGATTGTGTGATTACGGTCGGAAGCGAGGCAGCCTCTAAGCGTGTGATG
TATTCAGTCAGTCGTTTTATTGAGAAACGGCTAGGTTTGAAAGTAAACATGACCAAGACTAAGATTACCAGACCAAGAGA
GTTGAAATATCTAGGTTTTGGGTTCTGGAAATCATCAGATGGTTGGAAAAGCCGTCCACATCAAGATAGTGTTCGGAGAT
TTAAGTTTAAATTGAAGAAACTAACACAGAGGAAATGGAGTATAGACCTAACAAGACGTATTGAGCAACTGAATTTGTCT
ATTCGAGGATGGATAAACTATTTCTCATTGGGAAATATGAAAAGTATAGTCGCCAGCATAGATGAGCGCTTGCGTACTCG
CCTACGAGTGATTATCTGGAAGCAATGGAAGAAGAAATCGAGACGATTATGGGGATTGCTTAAGTTAGGAGTTCCTAAAT
GGATAGCAGATAAGGTATCTGGCTGGGGCGACCATTATCAATTAGTAGCTCAGAAGTCGGTACTTAAACGTGCTATATCA
AAACCAGTCCTGGAAAAACGTGGACTGGTTTCGTGTTTGGATTATTACCTTGAACGACATGCGTTAAAAGTTAGTTGA

Upstream 100 bases:

>100_bases
GAGTGGTCTGATAGAACTGGACTTTGACACGTAATGACTAGATGAAGGTTCACCAATATAAGATGTCCCTCAGGCACCAA
AACAAGAAAGGAATACGCAC

Downstream 100 bases:

>100_bases
ACCGCCGTATGCCGAACGGCACGTACGGTGGTGTGAGAGGGGCTAGAGATTATCCCCTACTCGATTAACTCCCCTGAAAT
TTATTTTAATTATGCAAATT

Product: GBSi1, group II intron, maturase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 425; Mature: 424

Protein sequence:

>425_residues
MSKLLDKILSRENMLEAYNQVKSNKGSAGIDGMTIEEMDNYLRQNWRLTKELIKQRKYKPQPVLKVEIPKPDGGIRQLGI
PTVMDRMIQQAIVQVMSPICEPHFSDTSYGFRPNRSCEKAIMKLLEYLNDGYEWIVDIDLEKFFDTVPQDRLMSLVHNII
EDGDTESLIRKYLHSGVIINGQRYKTLVGTPQGGNLSPLLSNIMLNELDKELEKRGLRFVRYADDCVITVGSEAASKRVM
YSVSRFIEKRLGLKVNMTKTKITRPRELKYLGFGFWKSSDGWKSRPHQDSVRRFKFKLKKLTQRKWSIDLTRRIEQLNLS
IRGWINYFSLGNMKSIVASIDERLRTRLRVIIWKQWKKKSRRLWGLLKLGVPKWIADKVSGWGDHYQLVAQKSVLKRAIS
KPVLEKRGLVSCLDYYLERHALKVS

Sequences:

>Translated_425_residues
MSKLLDKILSRENMLEAYNQVKSNKGSAGIDGMTIEEMDNYLRQNWRLTKELIKQRKYKPQPVLKVEIPKPDGGIRQLGI
PTVMDRMIQQAIVQVMSPICEPHFSDTSYGFRPNRSCEKAIMKLLEYLNDGYEWIVDIDLEKFFDTVPQDRLMSLVHNII
EDGDTESLIRKYLHSGVIINGQRYKTLVGTPQGGNLSPLLSNIMLNELDKELEKRGLRFVRYADDCVITVGSEAASKRVM
YSVSRFIEKRLGLKVNMTKTKITRPRELKYLGFGFWKSSDGWKSRPHQDSVRRFKFKLKKLTQRKWSIDLTRRIEQLNLS
IRGWINYFSLGNMKSIVASIDERLRTRLRVIIWKQWKKKSRRLWGLLKLGVPKWIADKVSGWGDHYQLVAQKSVLKRAIS
KPVLEKRGLVSCLDYYLERHALKVS
>Mature_424_residues
SKLLDKILSRENMLEAYNQVKSNKGSAGIDGMTIEEMDNYLRQNWRLTKELIKQRKYKPQPVLKVEIPKPDGGIRQLGIP
TVMDRMIQQAIVQVMSPICEPHFSDTSYGFRPNRSCEKAIMKLLEYLNDGYEWIVDIDLEKFFDTVPQDRLMSLVHNIIE
DGDTESLIRKYLHSGVIINGQRYKTLVGTPQGGNLSPLLSNIMLNELDKELEKRGLRFVRYADDCVITVGSEAASKRVMY
SVSRFIEKRLGLKVNMTKTKITRPRELKYLGFGFWKSSDGWKSRPHQDSVRRFKFKLKKLTQRKWSIDLTRRIEQLNLSI
RGWINYFSLGNMKSIVASIDERLRTRLRVIIWKQWKKKSRRLWGLLKLGVPKWIADKVSGWGDHYQLVAQKSVLKRAISK
PVLEKRGLVSCLDYYLERHALKVS

Specific function: Unknown

COG id: COG3344

COG function: function code L; Retron-type reverse transcriptase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 reverse transcriptase domain [H]

Homologues:

Organism=Saccharomyces cerevisiae, GI6226521, Length=397, Percent_Identity=27.2040302267003, Blast_Score=134, Evalue=2e-32,
Organism=Saccharomyces cerevisiae, GI6226520, Length=319, Percent_Identity=29.7805642633229, Blast_Score=116, Evalue=6e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015706
- InterPro:   IPR000477 [H]

Pfam domain/function: PF00078 RVT_1 [H]

EC number: NA

Molecular weight: Translated: 49556; Mature: 49425

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: PS50878 RT_POL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKLLDKILSRENMLEAYNQVKSNKGSAGIDGMTIEEMDNYLRQNWRLTKELIKQRKYKP
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
QPVLKVEIPKPDGGIRQLGIPTVMDRMIQQAIVQVMSPICEPHFSDTSYGFRPNRSCEKA
CCEEEEECCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
IMKLLEYLNDGYEWIVDIDLEKFFDTVPQDRLMSLVHNIIEDGDTESLIRKYLHSGVIIN
HHHHHHHHCCCCEEEEEECHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEC
GQRYKTLVGTPQGGNLSPLLSNIMLNELDKELEKRGLRFVRYADDCVITVGSEAASKRVM
CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCHHHHHHHH
YSVSRFIEKRLGLKVNMTKTKITRPRELKYLGFGFWKSSDGWKSRPHQDSVRRFKFKLKK
HHHHHHHHHHHCCEEEEHHHHCCCCCHHHEEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
LTQRKWSIDLTRRIEQLNLSIRGWINYFSLGNMKSIVASIDERLRTRLRVIIWKQWKKKS
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRLWGLLKLGVPKWIADKVSGWGDHYQLVAQKSVLKRAISKPVLEKRGLVSCLDYYLERH
HHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALKVS
HHCCC
>Mature Secondary Structure 
SKLLDKILSRENMLEAYNQVKSNKGSAGIDGMTIEEMDNYLRQNWRLTKELIKQRKYKP
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
QPVLKVEIPKPDGGIRQLGIPTVMDRMIQQAIVQVMSPICEPHFSDTSYGFRPNRSCEKA
CCEEEEECCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHH
IMKLLEYLNDGYEWIVDIDLEKFFDTVPQDRLMSLVHNIIEDGDTESLIRKYLHSGVIIN
HHHHHHHHCCCCEEEEEECHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCEEEC
GQRYKTLVGTPQGGNLSPLLSNIMLNELDKELEKRGLRFVRYADDCVITVGSEAASKRVM
CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCHHHHHHHH
YSVSRFIEKRLGLKVNMTKTKITRPRELKYLGFGFWKSSDGWKSRPHQDSVRRFKFKLKK
HHHHHHHHHHHCCEEEEHHHHCCCCCHHHEEEEEEEECCCCCCCCCCHHHHHHHHHHHHH
LTQRKWSIDLTRRIEQLNLSIRGWINYFSLGNMKSIVASIDERLRTRLRVIIWKQWKKKS
HHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RRLWGLLKLGVPKWIADKVSGWGDHYQLVAQKSVLKRAISKPVLEKRGLVSCLDYYLERH
HHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALKVS
HHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]