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The map label for this gene is yhaM [H]

Identifier: 225859735

GI number: 225859735

Start: 1888996

End: 1889937

Strand: Reverse

Name: yhaM [H]

Synonym: SP70585_2051

Alternate gene names: 225859735

Gene position: 1889937-1888996 (Counterclockwise)

Preceding gene: 225859736

Following gene: 225859734

Centisome position: 86.51

GC content: 44.69

Gene sequence:

>942_bases
ATGAAGATTAGTCACATGAAAAAAGATGAGCTATTTGAAGGCTTTTACCTAATCAAATCAGCTGACCTGAGGCAAACTCG
AGCTGGGAAAAACTACCTAGCCTTTACCTTCCAAGATGATAGTGGCGAGATTGATGGGAAGCTCTGGGATGCCCAACCTC
ATAACATTGAGGCCTTTACCGCAGGTAAGGTTGTCCACATGAAAGGACGCCGAGAAGTTTATAACAATACCCCTCAAGTC
AATCAAATTACTCTCCGCCTGCCTCAAGCTGGTGAACCCAATGACCCAGCCGATTTCAAGGTCAAGTCACCAGTTGATGT
CAAGGAAATTCGTGACTACATGTCGCAAATGATTTTCAAAATTGAAAATCCTGTCTGGCAACGGATTGTCCGAAATCTCT
ACACCAAGTATGATAAGGAATTCTACTCCTATCCAGCTGCCAAGACCAACCACCATGCCTTTGAAACGGGGTTGGCTTAT
CATACGGCGACCATGGTACGTTTGGCAGACGCTATTAGCGAAGTTTATCCTCAGCTCAATAAGAGCCTGCTCTATGCGGG
GATTATGCTGCATGACTTAGCTAAGGTTATCGAGTTGACGGGGCCAGACCAGACAGAGTACACAGTGCGAGGTAATCTTC
TTGGACATATCGCTCTCATTGATAGCGAAATTACCAAGACAGTTATGGAACTCGGCATCGATGATACCAAGGAAGAAGTC
GTTTTGCTTCGTCATGTCATCCTCAGTCACCACGGCTTGCTTGAGTATGGAAGTCCAGTCCGTCCACGTATTATGGAGGC
AGAGATTATCCATATGATTGACAATCTGGATGCAAGCATGATGATGATGTCAACAGCTCTGGCTTTGGTGGATAAAGGAG
AGATGACCAATAAAATCTTCGCTATGGATAATCGTTCCTTCTATAAACCAGATTTAGATTGA

Upstream 100 bases:

>100_bases
CGTCGTACCATAGCTATCGAGCGGACGCTCCGTCACATTGAGTTGTCAGAAGGTGAGCCTGCGCTTGATCTACTCCATTT
TCAAGAAAATGAGGAAGAAT

Downstream 100 bases:

>100_bases
TAATTTAAGAAAAATGAGCATTTTTTAGGATAAGAATGTTCGTTTTTTTATGTGAATATGGTATAATAAGTAAAAGACAA
AAATGAATACTCTTCGAAAA

Product: 3'-5' exoribonuclease YhaM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MKISHMKKDELFEGFYLIKSADLRQTRAGKNYLAFTFQDDSGEIDGKLWDAQPHNIEAFTAGKVVHMKGRREVYNNTPQV
NQITLRLPQAGEPNDPADFKVKSPVDVKEIRDYMSQMIFKIENPVWQRIVRNLYTKYDKEFYSYPAAKTNHHAFETGLAY
HTATMVRLADAISEVYPQLNKSLLYAGIMLHDLAKVIELTGPDQTEYTVRGNLLGHIALIDSEITKTVMELGIDDTKEEV
VLLRHVILSHHGLLEYGSPVRPRIMEAEIIHMIDNLDASMMMMSTALALVDKGEMTNKIFAMDNRSFYKPDLD

Sequences:

>Translated_313_residues
MKISHMKKDELFEGFYLIKSADLRQTRAGKNYLAFTFQDDSGEIDGKLWDAQPHNIEAFTAGKVVHMKGRREVYNNTPQV
NQITLRLPQAGEPNDPADFKVKSPVDVKEIRDYMSQMIFKIENPVWQRIVRNLYTKYDKEFYSYPAAKTNHHAFETGLAY
HTATMVRLADAISEVYPQLNKSLLYAGIMLHDLAKVIELTGPDQTEYTVRGNLLGHIALIDSEITKTVMELGIDDTKEEV
VLLRHVILSHHGLLEYGSPVRPRIMEAEIIHMIDNLDASMMMMSTALALVDKGEMTNKIFAMDNRSFYKPDLD
>Mature_313_residues
MKISHMKKDELFEGFYLIKSADLRQTRAGKNYLAFTFQDDSGEIDGKLWDAQPHNIEAFTAGKVVHMKGRREVYNNTPQV
NQITLRLPQAGEPNDPADFKVKSPVDVKEIRDYMSQMIFKIENPVWQRIVRNLYTKYDKEFYSYPAAKTNHHAFETGLAY
HTATMVRLADAISEVYPQLNKSLLYAGIMLHDLAKVIELTGPDQTEYTVRGNLLGHIALIDSEITKTVMELGIDDTKEEV
VLLRHVILSHHGLLEYGSPVRPRIMEAEIIHMIDNLDASMMMMSTALALVDKGEMTNKIFAMDNRSFYKPDLD

Specific function: Shows a 3'-5' exoribonuclease activity [H]

COG id: COG3481

COG function: function code R; Predicted HD-superfamily hydrolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yhaM family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020873
- InterPro:   IPR003607
- InterPro:   IPR012340
- InterPro:   IPR004365 [H]

Pfam domain/function: PF01336 tRNA_anti [H]

EC number: NA

Molecular weight: Translated: 35787; Mature: 35787

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKISHMKKDELFEGFYLIKSADLRQTRAGKNYLAFTFQDDSGEIDGKLWDAQPHNIEAFT
CCCCCCCHHHHHHCCCEEECCCHHHHHCCCCEEEEEEECCCCCCCCEEECCCCCCEEEEE
AGKVVHMKGRREVYNNTPQVNQITLRLPQAGEPNDPADFKVKSPVDVKEIRDYMSQMIFK
CCCEEEECCCHHHHCCCCCCEEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHH
IENPVWQRIVRNLYTKYDKEFYSYPAAKTNHHAFETGLAYHTATMVRLADAISEVYPQLN
HCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KSLLYAGIMLHDLAKVIELTGPDQTEYTVRGNLLGHIALIDSEITKTVMELGIDDTKEEV
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEEEEHHHHHHHHHHHHCCCCCHHHH
VLLRHVILSHHGLLEYGSPVRPRIMEAEIIHMIDNLDASMMMMSTALALVDKGEMTNKIF
HHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEE
AMDNRSFYKPDLD
EECCCCCCCCCCC
>Mature Secondary Structure
MKISHMKKDELFEGFYLIKSADLRQTRAGKNYLAFTFQDDSGEIDGKLWDAQPHNIEAFT
CCCCCCCHHHHHHCCCEEECCCHHHHHCCCCEEEEEEECCCCCCCCEEECCCCCCEEEEE
AGKVVHMKGRREVYNNTPQVNQITLRLPQAGEPNDPADFKVKSPVDVKEIRDYMSQMIFK
CCCEEEECCCHHHHCCCCCCEEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHH
IENPVWQRIVRNLYTKYDKEFYSYPAAKTNHHAFETGLAYHTATMVRLADAISEVYPQLN
HCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KSLLYAGIMLHDLAKVIELTGPDQTEYTVRGNLLGHIALIDSEITKTVMELGIDDTKEEV
HHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEEEEEEEHHHHHHHHHHHHCCCCCHHHH
VLLRHVILSHHGLLEYGSPVRPRIMEAEIIHMIDNLDASMMMMSTALALVDKGEMTNKIF
HHHHHHHHHCCCHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCEEE
AMDNRSFYKPDLD
EECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA