Click here to switch to the map view.

The map label for this gene is yckA [H]

Identifier: 225858525

GI number: 225858525

Start: 693531

End: 694208

Strand: Reverse

Name: yckA [H]

Synonym: SP70585_0757

Alternate gene names: 225858525

Gene position: 694208-693531 (Counterclockwise)

Preceding gene: 225858526

Following gene: 225858524

Centisome position: 31.78

GC content: 41.74

Gene sequence:

>678_bases
ATGCAGGATTCGGGAATCCAAGTACTCTTTCAGGGAAATAATCTCCTGAGAATCTTACAGGGATTGGGCGTTACGATTGA
GATATCCATCCTGTCTGTCCTCTTATCCATGATGTTCGGAACAGTCATGGGAATCATCATGACCTCCCATTCTAGAATCA
TACGATTTTTAACACGATTGTATCTGGACTTTACCCGTATCATGCCCCAGCTGGTGCTACTCTTCATCGTTTACTTTGGC
TTAGCTCGAAACTTTAATATCAATATCTCAGGTGAGACTTCAGCTATTATCGTTTTTACCCTCTGGGGAGCAGCTGAAAT
GGGAGACTTGGTACGTGGAGCTATCACTTCTCTCCCTAAACATCAGTTTGAAAGTGGACAGGCACTCGGCTTGACTAATG
TTCAACTTTACTACCACATCATCATCCCACAAGTCTTAAGAAGACTGCTACCGCAGGCTATCAATCTTGTCACTCGGATG
ATTAAAACCACTTCATTAGTTATTTTGATTGGGGTTGTGGAAGTGACCAAAGTTGGACAACAAATCATCGATAGCAATCG
CCTGACCATCCCAACTGCTTCATTTTGGATTTATGGAACCATTCTAGTCTTATATTTCGCAGTTTGCTACCCTATTTCCA
AACTATCCACTCACTTAGAAAAACATTGGAGAAACTAA

Upstream 100 bases:

>100_bases
TATGAGACAGACATTGCGCTAGCTATGTTGGTAGTTGCTTATCTGATCATACTGCTACCCATCTCACTGGTCTTTAGCTG
GATAGAAAGGAGGCTCCGCC

Downstream 100 bases:

>100_bases
ATGTCTGAAACTATCTTAGAAATCAAGGAACTAAAAAAATCCTTCGGAGACAATCCCATCCTCCAAGGACTTTCTCTAGA
AATCAAAAAAGGGAAGTTGT

Product: ABC transporter membrane-spanning permease - glutamine transport

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MQDSGIQVLFQGNNLLRILQGLGVTIEISILSVLLSMMFGTVMGIIMTSHSRIIRFLTRLYLDFTRIMPQLVLLFIVYFG
LARNFNINISGETSAIIVFTLWGAAEMGDLVRGAITSLPKHQFESGQALGLTNVQLYYHIIIPQVLRRLLPQAINLVTRM
IKTTSLVILIGVVEVTKVGQQIIDSNRLTIPTASFWIYGTILVLYFAVCYPISKLSTHLEKHWRN

Sequences:

>Translated_225_residues
MQDSGIQVLFQGNNLLRILQGLGVTIEISILSVLLSMMFGTVMGIIMTSHSRIIRFLTRLYLDFTRIMPQLVLLFIVYFG
LARNFNINISGETSAIIVFTLWGAAEMGDLVRGAITSLPKHQFESGQALGLTNVQLYYHIIIPQVLRRLLPQAINLVTRM
IKTTSLVILIGVVEVTKVGQQIIDSNRLTIPTASFWIYGTILVLYFAVCYPISKLSTHLEKHWRN
>Mature_225_residues
MQDSGIQVLFQGNNLLRILQGLGVTIEISILSVLLSMMFGTVMGIIMTSHSRIIRFLTRLYLDFTRIMPQLVLLFIVYFG
LARNFNINISGETSAIIVFTLWGAAEMGDLVRGAITSLPKHQFESGQALGLTNVQLYYHIIIPQVLRRLLPQAINLVTRM
IKTTSLVILIGVVEVTKVGQQIIDSNRLTIPTASFWIYGTILVLYFAVCYPISKLSTHLEKHWRN

Specific function: Part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=222, Percent_Identity=30.6306306306306, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI87082239, Length=209, Percent_Identity=27.7511961722488, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1787030, Length=206, Percent_Identity=30.0970873786408, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1786874, Length=179, Percent_Identity=26.8156424581006, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1788646, Length=173, Percent_Identity=30.635838150289, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1787087, Length=183, Percent_Identity=24.0437158469945, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1788645, Length=215, Percent_Identity=27.4418604651163, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1786873, Length=217, Percent_Identity=22.5806451612903, Blast_Score=67, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 25339; Mature: 25339

Theoretical pI: Translated: 10.21; Mature: 10.21

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDSGIQVLFQGNNLLRILQGLGVTIEISILSVLLSMMFGTVMGIIMTSHSRIIRFLTRL
CCCCCEEEEEECCHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLDFTRIMPQLVLLFIVYFGLARNFNINISGETSAIIVFTLWGAAEMGDLVRGAITSLPK
HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHCCH
HQFESGQALGLTNVQLYYHIIIPQVLRRLLPQAINLVTRMIKTTSLVILIGVVEVTKVGQ
HHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIIDSNRLTIPTASFWIYGTILVLYFAVCYPISKLSTHLEKHWRN
HHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MQDSGIQVLFQGNNLLRILQGLGVTIEISILSVLLSMMFGTVMGIIMTSHSRIIRFLTRL
CCCCCEEEEEECCHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YLDFTRIMPQLVLLFIVYFGLARNFNINISGETSAIIVFTLWGAAEMGDLVRGAITSLPK
HHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCHHHHHHHHHHHHHCCH
HQFESGQALGLTNVQLYYHIIIPQVLRRLLPQAINLVTRMIKTTSLVILIGVVEVTKVGQ
HHHCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QIIDSNRLTIPTASFWIYGTILVLYFAVCYPISKLSTHLEKHWRN
HHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7704255; 8969502; 9384377 [H]