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The map label for this gene is yfdE [H]

Identifier: 225686859

GI number: 225686859

Start: 1077037

End: 1078299

Strand: Direct

Name: yfdE [H]

Synonym: BMEA_B1099

Alternate gene names: 225686859

Gene position: 1077037-1078299 (Clockwise)

Preceding gene: 225686858

Following gene: 225686862

Centisome position: 90.85

GC content: 58.99

Gene sequence:

>1263_bases
ATGATGAATGAAATAAAGGCGACGGGCTCGCCCGACAGCAATGCAGCCTTGCCGCTTGCCGGGATAAAGGTTCTGGACCT
GTCGCGGGTGCTTGCCGGACCCTGGGCGACGATGAGCCTTGCCGACATGGGAGCCGAGGTCTGGAAGATTGAGAATATCC
AGGGCGGCGACGATACCCGCGCCTGGTCGGTGCCCAATTACAAGGGGGCGAGCACCTATTTCCTGTGCGCCAATCGCGGC
AAGAAAAGCCTGGCTCTCGATCTGAAATCCCGTGAAGGCCTGGAAATCATCCATGAACTGGCCAAGCAGGCCGATGTGGT
TGTCGAGAACTTTCGTTCAGGGACGGTCGAACGGCTGAAGATCGATTATGAAAGCCTGAAAGCGCTCAATCCCGGCATCG
TCTATTGCTCGATTTCCGGTTATGGCCAGACCGGCCCGGAGGCGCAGCGACCGGGTTATGATTTCGTCGTGCAGGCGGAA
TCCGGCCTGATGTCGATTACGGGGCAGATCGATGGAGAGCCGACGCGCATCGGCGTTGCCATGACGGATATCGTTGCGGG
CATGGTTGCCACGCAATCGGTCCTCGCCGCCCTTTATCAGCGCAAGACGACGGGGCTTGGTCAATATATCGACGTTTCAC
TTTATGAATGCGCGCTCAATACATTGATCAATGTCGGCAGCGCGCATCTGAATGGGGGGCATGTTCCCGCCCGCTTCGGC
AATGCCCATCCGACGGTCGTTCCCTACCAGATTTTTGAATGTTCCGACGGTGCGTTCGCGCTGGCGGTCGGCAATGATCG
CCAGTTTGCCATTCTTTGCGAACGGATCATCGATCTGCCCGAACTGGCCGCAGACGAGCGCTTCAAAACGGCAAGCGGTC
GTGCCTTAAACCGCGCCGCGCTGATCCCGCCAATGGCGGAACGCTTTCGAACCAATACCCGCCAGCACTGGATGTCCGCA
TGCCTGAAGATGGGTGTGCCCGCAGGGCAGGTGAAAACGGTGCCGGAGGCCTTTGAAAGCCCGAACGTGAAGGCGCGGCA
GGTGGTGCAGAAACTGGAAAGCGCGCATCTGGGCCCCATTTCGCTGGTGCGGCCCGCACAGGGGCTGAAAGCGCAGGAAA
ACGCCGCCTACAAGGCGCCGCCGATGCTTGGTGAAGACAGTGCCTCTGTGCTCGGAGATGCTCTCGGACTGGATGGAAAC
AAGCTGGCCGATCTGATCGCGGCCGGCGTCATTTATCAATATCAGCCGAAGGATTGCGAATAG

Upstream 100 bases:

>100_bases
GAGGTGGCGTGCCACTTCCCGGAGGAATGGCGGGCAGCATCCTGATTTTGTTTCACCAATTTTGAACGGGCGACCGATCG
AGAAGGATACGAATTTGAAA

Downstream 100 bases:

>100_bases
GGAAAATGGAAATGCAGACCCGATATCCAGATGTAAAGCTTTTCATTGACGGAACGTGGCGCGATGGATCGCGTGGCGAA
ACGATCGAAATCTTCAATCC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 420; Mature: 420

Protein sequence:

>420_residues
MMNEIKATGSPDSNAALPLAGIKVLDLSRVLAGPWATMSLADMGAEVWKIENIQGGDDTRAWSVPNYKGASTYFLCANRG
KKSLALDLKSREGLEIIHELAKQADVVVENFRSGTVERLKIDYESLKALNPGIVYCSISGYGQTGPEAQRPGYDFVVQAE
SGLMSITGQIDGEPTRIGVAMTDIVAGMVATQSVLAALYQRKTTGLGQYIDVSLYECALNTLINVGSAHLNGGHVPARFG
NAHPTVVPYQIFECSDGAFALAVGNDRQFAILCERIIDLPELAADERFKTASGRALNRAALIPPMAERFRTNTRQHWMSA
CLKMGVPAGQVKTVPEAFESPNVKARQVVQKLESAHLGPISLVRPAQGLKAQENAAYKAPPMLGEDSASVLGDALGLDGN
KLADLIAAGVIYQYQPKDCE

Sequences:

>Translated_420_residues
MMNEIKATGSPDSNAALPLAGIKVLDLSRVLAGPWATMSLADMGAEVWKIENIQGGDDTRAWSVPNYKGASTYFLCANRG
KKSLALDLKSREGLEIIHELAKQADVVVENFRSGTVERLKIDYESLKALNPGIVYCSISGYGQTGPEAQRPGYDFVVQAE
SGLMSITGQIDGEPTRIGVAMTDIVAGMVATQSVLAALYQRKTTGLGQYIDVSLYECALNTLINVGSAHLNGGHVPARFG
NAHPTVVPYQIFECSDGAFALAVGNDRQFAILCERIIDLPELAADERFKTASGRALNRAALIPPMAERFRTNTRQHWMSA
CLKMGVPAGQVKTVPEAFESPNVKARQVVQKLESAHLGPISLVRPAQGLKAQENAAYKAPPMLGEDSASVLGDALGLDGN
KLADLIAAGVIYQYQPKDCE
>Mature_420_residues
MMNEIKATGSPDSNAALPLAGIKVLDLSRVLAGPWATMSLADMGAEVWKIENIQGGDDTRAWSVPNYKGASTYFLCANRG
KKSLALDLKSREGLEIIHELAKQADVVVENFRSGTVERLKIDYESLKALNPGIVYCSISGYGQTGPEAQRPGYDFVVQAE
SGLMSITGQIDGEPTRIGVAMTDIVAGMVATQSVLAALYQRKTTGLGQYIDVSLYECALNTLINVGSAHLNGGHVPARFG
NAHPTVVPYQIFECSDGAFALAVGNDRQFAILCERIIDLPELAADERFKTASGRALNRAALIPPMAERFRTNTRQHWMSA
CLKMGVPAGQVKTVPEAFESPNVKARQVVQKLESAHLGPISLVRPAQGLKAQENAAYKAPPMLGEDSASVLGDALGLDGN
KLADLIAAGVIYQYQPKDCE

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=410, Percent_Identity=41.7073170731707, Blast_Score=332, Evalue=5e-91,
Organism=Homo sapiens, GI300863124, Length=436, Percent_Identity=39.2201834862385, Blast_Score=317, Evalue=1e-86,
Organism=Homo sapiens, GI13376042, Length=436, Percent_Identity=36.2385321100917, Blast_Score=274, Evalue=9e-74,
Organism=Homo sapiens, GI300863126, Length=410, Percent_Identity=38.0487804878049, Blast_Score=272, Evalue=5e-73,
Organism=Homo sapiens, GI266456254, Length=400, Percent_Identity=27, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI42794625, Length=400, Percent_Identity=27, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI266458397, Length=201, Percent_Identity=32.8358208955224, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI266458393, Length=201, Percent_Identity=32.8358208955224, Blast_Score=106, Evalue=3e-23,
Organism=Homo sapiens, GI266458395, Length=147, Percent_Identity=35.3741496598639, Blast_Score=88, Evalue=2e-17,
Organism=Homo sapiens, GI42822893, Length=147, Percent_Identity=35.3741496598639, Blast_Score=87, Evalue=4e-17,
Organism=Escherichia coli, GI87082093, Length=332, Percent_Identity=36.4457831325301, Blast_Score=243, Evalue=2e-65,
Organism=Escherichia coli, GI1788717, Length=413, Percent_Identity=28.5714285714286, Blast_Score=138, Evalue=7e-34,
Organism=Escherichia coli, GI1786222, Length=405, Percent_Identity=26.4197530864197, Blast_Score=110, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI32564160, Length=201, Percent_Identity=31.8407960199005, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI115535051, Length=311, Percent_Identity=27.3311897106109, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24648431, Length=402, Percent_Identity=41.7910447761194, Blast_Score=325, Evalue=4e-89,
Organism=Drosophila melanogaster, GI24585488, Length=416, Percent_Identity=24.2788461538462, Blast_Score=105, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 45022; Mature: 45022

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMNEIKATGSPDSNAALPLAGIKVLDLSRVLAGPWATMSLADMGAEVWKIENIQGGDDTR
CCCCCCCCCCCCCCCCCEECCEEHHHHHHHHCCCCHHHHHHHCCCCEEEECCCCCCCCCC
AWSVPNYKGASTYFLCANRGKKSLALDLKSREGLEIIHELAKQADVVVENFRSGTVERLK
EECCCCCCCCCEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE
IDYESLKALNPGIVYCSISGYGQTGPEAQRPGYDFVVQAESGLMSITGQIDGEPTRIGVA
ECHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCEEEHH
MTDIVAGMVATQSVLAALYQRKTTGLGQYIDVSLYECALNTLINVGSAHLNGGHVPARFG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
NAHPTVVPYQIFECSDGAFALAVGNDRQFAILCERIIDLPELAADERFKTASGRALNRAA
CCCCCEEEEEEEEECCCEEEEEECCCCHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCHH
LIPPMAERFRTNTRQHWMSACLKMGVPAGQVKTVPEAFESPNVKARQVVQKLESAHLGPI
CCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCE
SLVRPAQGLKAQENAAYKAPPMLGEDSASVLGDALGLDGNKLADLIAAGVIYQYQPKDCE
EEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHEEEECCCCCC
>Mature Secondary Structure
MMNEIKATGSPDSNAALPLAGIKVLDLSRVLAGPWATMSLADMGAEVWKIENIQGGDDTR
CCCCCCCCCCCCCCCCCEECCEEHHHHHHHHCCCCHHHHHHHCCCCEEEECCCCCCCCCC
AWSVPNYKGASTYFLCANRGKKSLALDLKSREGLEIIHELAKQADVVVENFRSGTVERLK
EECCCCCCCCCEEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEE
IDYESLKALNPGIVYCSISGYGQTGPEAQRPGYDFVVQAESGLMSITGQIDGEPTRIGVA
ECHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCCEEEEEECCCCCCCEEEHH
MTDIVAGMVATQSVLAALYQRKTTGLGQYIDVSLYECALNTLINVGSAHLNGGHVPARFG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
NAHPTVVPYQIFECSDGAFALAVGNDRQFAILCERIIDLPELAADERFKTASGRALNRAA
CCCCCEEEEEEEEECCCEEEEEECCCCHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCHH
LIPPMAERFRTNTRQHWMSACLKMGVPAGQVKTVPEAFESPNVKARQVVQKLESAHLGPI
CCCHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHCCCCCE
SLVRPAQGLKAQENAAYKAPPMLGEDSASVLGDALGLDGNKLADLIAAGVIYQYQPKDCE
EEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]