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The map label for this gene is yddU [C]

Identifier: 225686735

GI number: 225686735

Start: 943985

End: 946282

Strand: Reverse

Name: yddU [C]

Synonym: BMEA_B0963

Alternate gene names: 225686735

Gene position: 946282-943985 (Counterclockwise)

Preceding gene: 225686736

Following gene: 225686734

Centisome position: 79.82

GC content: 56.66

Gene sequence:

>2298_bases
ATGTGGCGAAGCCGTAAACCTGAGATACCCGCAGACGTGCGGCTATCTTTTCTGCGAGCGCTTTATGGCAATCGCACAAC
GCTCTGGTTTGGTTTGCTCGCCCATGTGGTGGCGTGCGTCGTCATCTATGTGAAAACCGCCGACTGGCACTTTCTGGGCT
TTGCGGGCATTTTTACTTTTGTCGCATTCGGCCGCCTCTATGACATGCACAAGTTCGATCAGGCGAAATTGACGGCGATT
TCGCATGACGATTTGGACAAGTGGGAAGCGCATTATCTGATCGGCGCTTCGCTTGTCTGCGCTACGCTCGGCATGTTGTG
TTTTTTCTCAAGCTATGTCCTGCGCGATGCCTTTGCGGAGCTTGCAAGCCTGACCGTTCTTCTGGCCTCGGTGGTTTCAA
TCGTCGGGCGCAATTACGCGTCGGCCAAGGCTGTGATCCTGATGTCGGTCTGCACGCTGATGCCCGTGCTTGCCGGGCTT
ATTCTTGCGGGGACGCCCTTTCACATCATTATCGGTCTTTTGCTGATCCCGTATTTTCTGTCCAACATCCAGATGGCGAA
CGGGTTGCGGGAGTTTCTGTTCGCCGCCGTTATGGGCAAGCGCCGCCTTTCCATCGTGGCCGGGCGCTTCGATGCAGCGC
TCAACAATATGCCGCAGGGGCTTTTGATGTTCGACGGCGAGCAGCGTATTGCCGTCATCAACAACAAGGCCAAGGCGATG
ATGAGGATCGCCGAACACACCAAGCTGCACGGGCGCAAGCTGGAGGTGCTGTTGCGCTATTGCGTGAAGCAGGGCCTGTT
TCCGCATAATGATCTAACCAATATCCGCTTGCGGATGGAAGATATCCTTATGGGCCGCAAGGCGCGGGATATTTTCCAGC
TTTCCGACCGTCGCTATATCGAGTGCATCGGCAACCAGACCGTCAGTTCCGGCGCGGTCATGATGTTTGAAGACGTCACC
CAGCGTGTGGAGTCGGAAGCGCGCATTCAGCATATGGCGCGTTTCGACGGGCTGACGGGACTACCGAACCGGAACTATTT
CGAGACCATGATGCGTTCGCTGCGGCCCCATCAGGACCAGAATTCAAAGGTTGCGCTGATCGTCATCGACATCAATCATT
TCAAGCATGTCAACGATACGCTGGGCCACCATACCGGCGATGTGTTGCTGCGCCTTTTTGCCGAACGCCTCAATTCGCTC
GATCCGCAGCGTTATGTCGCCTCGCGGTTCGGCGGCGACGAGTTCGTCATCTTCGTTTTCAACCTGCATGATTCCAGCGA
AGTCAACGGGATGATGGAACACATCATTTCGGCTGTTAAGGGCGTTTACGACCTCGATGGCGCGCAGGTCGATATCGATA
TCAGCGCCGGTGTCGCTATCGAGGATATCGACAAGTGCGATGTCGGAAACATGCACATCAAAGCCGATCTGGCGCTTTAT
GAAGCAAAGGGTGAGGAAAACCGGCAGTGGGCTGCTTTCGTCGGTGCTATGGATACAAAATATCGCAGCCGCCAGAAATT
GAAGGCAGACCTGCGGCAGGCTGTTGCCCAGCGCGAAATCCACGTCGCTTATCAGCCGATCGTTAGTGCGCAGTCGCTGC
GGATCGTCGCCTGCGAGGCGCTTGCGCGCTGGAACCATGCCGAGCTTGGCCTTGTGCCGCCCGCAGAGTTTATTCCACTT
GCCGAGGAAATAGGCCTCATTTCAGAAATCACCCGCTTCATGCTGGAGCAGGCCTGCATGGATTGCCTGTCCTGGGGCGA
CAAGATCGTTGTGTCGGTCAATCTGTCGGCCATCGATCTGAAGAACAACGATATTGCGCGCGACATCGCCTATGCGCTTG
AGAAGTCCGGCCTGCCGGCGCACCGCCTGGAAGTCGAGGTGACGGAAAGCGCGATCATCGCAGACCGCAACAAGACGTCG
CTCGTCCTGCAACGCTTGAAGAATGCGGGCATCAATATCGCGCTCGATGATTTTGGAACCGGCTATTCGAGCCTCAGCTA
TCTCAATACCTTGCCGCTAACCAAGGTGAAGGTGGACCGCTCCTTCGTGCGCGATATCACCTCCGACAGGCGGTCGCTCA
TGCTTTTGCGCGGCGTCACCCAGCTTTCACATGAACTCGGTCTCGGCGTGACGGTCGAGGGGGTGGAAACGGAAGAGCAA
CTGGCGCTCATTCGTGTTGCCGCTGGCGCCGATCTGGTTCAGGGCTATCTCTTCGGCATGCCCCTTCCGACGGAAGAAAT
CAGCGTCCTTACCGCCAAATCAATGGTGCGGCGTGCGGGCGGGCGTACCGTCGCCTGA

Upstream 100 bases:

>100_bases
TTATGGTAGTTGTTGTGACAGCTTGTGGTTTAGTCTGGCGAAAGATATTTTTAAGTCATTCATGTCATATTTACCGGGTG
AAAGGGGCATAAGCAGCGAC

Downstream 100 bases:

>100_bases
TTTTGCACCGCAGCCACCTTCCCGCATAGGTGTTTCACGCTTTTGCTGGGCGTGCTCTTAAGCATAATATTGCTGGGACA
GGCGAATTGTTTCACGTTTT

Product: GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 765; Mature: 765

Protein sequence:

>765_residues
MWRSRKPEIPADVRLSFLRALYGNRTTLWFGLLAHVVACVVIYVKTADWHFLGFAGIFTFVAFGRLYDMHKFDQAKLTAI
SHDDLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAELASLTVLLASVVSIVGRNYASAKAVILMSVCTLMPVLAGL
ILAGTPFHIIIGLLLIPYFLSNIQMANGLREFLFAAVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINNKAKAM
MRIAEHTKLHGRKLEVLLRYCVKQGLFPHNDLTNIRLRMEDILMGRKARDIFQLSDRRYIECIGNQTVSSGAVMMFEDVT
QRVESEARIQHMARFDGLTGLPNRNYFETMMRSLRPHQDQNSKVALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSL
DPQRYVASRFGGDEFVIFVFNLHDSSEVNGMMEHIISAVKGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALY
EAKGEENRQWAAFVGAMDTKYRSRQKLKADLRQAVAQREIHVAYQPIVSAQSLRIVACEALARWNHAELGLVPPAEFIPL
AEEIGLISEITRFMLEQACMDCLSWGDKIVVSVNLSAIDLKNNDIARDIAYALEKSGLPAHRLEVEVTESAIIADRNKTS
LVLQRLKNAGINIALDDFGTGYSSLSYLNTLPLTKVKVDRSFVRDITSDRRSLMLLRGVTQLSHELGLGVTVEGVETEEQ
LALIRVAAGADLVQGYLFGMPLPTEEISVLTAKSMVRRAGGRTVA

Sequences:

>Translated_765_residues
MWRSRKPEIPADVRLSFLRALYGNRTTLWFGLLAHVVACVVIYVKTADWHFLGFAGIFTFVAFGRLYDMHKFDQAKLTAI
SHDDLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAELASLTVLLASVVSIVGRNYASAKAVILMSVCTLMPVLAGL
ILAGTPFHIIIGLLLIPYFLSNIQMANGLREFLFAAVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINNKAKAM
MRIAEHTKLHGRKLEVLLRYCVKQGLFPHNDLTNIRLRMEDILMGRKARDIFQLSDRRYIECIGNQTVSSGAVMMFEDVT
QRVESEARIQHMARFDGLTGLPNRNYFETMMRSLRPHQDQNSKVALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSL
DPQRYVASRFGGDEFVIFVFNLHDSSEVNGMMEHIISAVKGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALY
EAKGEENRQWAAFVGAMDTKYRSRQKLKADLRQAVAQREIHVAYQPIVSAQSLRIVACEALARWNHAELGLVPPAEFIPL
AEEIGLISEITRFMLEQACMDCLSWGDKIVVSVNLSAIDLKNNDIARDIAYALEKSGLPAHRLEVEVTESAIIADRNKTS
LVLQRLKNAGINIALDDFGTGYSSLSYLNTLPLTKVKVDRSFVRDITSDRRSLMLLRGVTQLSHELGLGVTVEGVETEEQ
LALIRVAAGADLVQGYLFGMPLPTEEISVLTAKSMVRRAGGRTVA
>Mature_765_residues
MWRSRKPEIPADVRLSFLRALYGNRTTLWFGLLAHVVACVVIYVKTADWHFLGFAGIFTFVAFGRLYDMHKFDQAKLTAI
SHDDLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAELASLTVLLASVVSIVGRNYASAKAVILMSVCTLMPVLAGL
ILAGTPFHIIIGLLLIPYFLSNIQMANGLREFLFAAVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINNKAKAM
MRIAEHTKLHGRKLEVLLRYCVKQGLFPHNDLTNIRLRMEDILMGRKARDIFQLSDRRYIECIGNQTVSSGAVMMFEDVT
QRVESEARIQHMARFDGLTGLPNRNYFETMMRSLRPHQDQNSKVALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSL
DPQRYVASRFGGDEFVIFVFNLHDSSEVNGMMEHIISAVKGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALY
EAKGEENRQWAAFVGAMDTKYRSRQKLKADLRQAVAQREIHVAYQPIVSAQSLRIVACEALARWNHAELGLVPPAEFIPL
AEEIGLISEITRFMLEQACMDCLSWGDKIVVSVNLSAIDLKNNDIARDIAYALEKSGLPAHRLEVEVTESAIIADRNKTS
LVLQRLKNAGINIALDDFGTGYSSLSYLNTLPLTKVKVDRSFVRDITSDRRSLMLLRGVTQLSHELGLGVTVEGVETEEQ
LALIRVAAGADLVQGYLFGMPLPTEEISVLTAKSMVRRAGGRTVA

Specific function: Unknown

COG id: COG2202

COG function: function code T; FOG: PAS/PAC domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=432, Percent_Identity=32.6388888888889, Blast_Score=232, Evalue=8e-62,
Organism=Escherichia coli, GI1787541, Length=429, Percent_Identity=32.8671328671329, Blast_Score=225, Evalue=9e-60,
Organism=Escherichia coli, GI1790496, Length=244, Percent_Identity=34.0163934426229, Blast_Score=151, Evalue=2e-37,
Organism=Escherichia coli, GI1786507, Length=253, Percent_Identity=32.8063241106719, Blast_Score=140, Evalue=2e-34,
Organism=Escherichia coli, GI226510982, Length=426, Percent_Identity=25.3521126760563, Blast_Score=137, Evalue=2e-33,
Organism=Escherichia coli, GI1788502, Length=290, Percent_Identity=31.0344827586207, Blast_Score=133, Evalue=5e-32,
Organism=Escherichia coli, GI87081743, Length=248, Percent_Identity=32.6612903225806, Blast_Score=125, Evalue=1e-29,
Organism=Escherichia coli, GI87081845, Length=284, Percent_Identity=31.6901408450704, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI87081980, Length=266, Percent_Identity=29.3233082706767, Blast_Score=120, Evalue=4e-28,
Organism=Escherichia coli, GI1787055, Length=240, Percent_Identity=31.25, Blast_Score=116, Evalue=5e-27,
Organism=Escherichia coli, GI1788849, Length=461, Percent_Identity=25.5965292841649, Blast_Score=102, Evalue=6e-23,
Organism=Escherichia coli, GI87082096, Length=438, Percent_Identity=25.3424657534247, Blast_Score=101, Evalue=2e-22,
Organism=Escherichia coli, GI1786584, Length=169, Percent_Identity=33.1360946745562, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI87081977, Length=183, Percent_Identity=32.2404371584699, Blast_Score=89, Evalue=8e-19,
Organism=Escherichia coli, GI1788956, Length=164, Percent_Identity=33.5365853658537, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1788381, Length=361, Percent_Identity=26.5927977839335, Blast_Score=87, Evalue=3e-18,
Organism=Escherichia coli, GI1787410, Length=231, Percent_Identity=26.8398268398268, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI87081881, Length=199, Percent_Identity=29.6482412060301, Blast_Score=66, Evalue=8e-12,
Organism=Escherichia coli, GI1787262, Length=158, Percent_Identity=29.1139240506329, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI145693134, Length=173, Percent_Identity=30.635838150289, Blast_Score=64, Evalue=5e-11,
Organism=Escherichia coli, GI1787816, Length=165, Percent_Identity=31.5151515151515, Blast_Score=63, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 85278; Mature: 85278

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWRSRKPEIPADVRLSFLRALYGNRTTLWFGLLAHVVACVVIYVKTADWHFLGFAGIFTF
CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHH
VAFGRLYDMHKFDQAKLTAISHDDLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAE
HHHHHHHHHHHCCCHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LASLTVLLASVVSIVGRNYASAKAVILMSVCTLMPVLAGLILAGTPFHIIIGLLLIPYFL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
SNIQMANGLREFLFAAVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINNKAKAM
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCHHHHH
MRIAEHTKLHGRKLEVLLRYCVKQGLFPHNDLTNIRLRMEDILMGRKARDIFQLSDRRYI
HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHEEHHHHHHCCHHHHHHHHCCCHHH
ECIGNQTVSSGAVMMFEDVTQRVESEARIQHMARFDGLTGLPNRNYFETMMRSLRPHQDQ
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCC
NSKVALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSLDPQRYVASRFGGDEFVIFVF
CCEEEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEEE
NLHDSSEVNGMMEHIISAVKGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALY
ECCCCHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCEEECCCCCCCCCEEEEEEEEEE
EAKGEENRQWAAFVGAMDTKYRSRQKLKADLRQAVAQREIHVAYQPIVSAQSLRIVACEA
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LARWNHAELGLVPPAEFIPLAEEIGLISEITRFMLEQACMDCLSWGDKIVVSVNLSAIDL
HHCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEE
KNNDIARDIAYALEKSGLPAHRLEVEVTESAIIADRNKTSLVLQRLKNAGINIALDDFGT
CCCCHHHHHHHHHHHCCCCCCEEEEEEECCEEEECCCHHHHHHHHHHHCCCEEEECCCCC
GYSSLSYLNTLPLTKVKVDRSFVRDITSDRRSLMLLRGVTQLSHELGLGVTVEGVETEEQ
CHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHH
LALIRVAAGADLVQGYLFGMPLPTEEISVLTAKSMVRRAGGRTVA
HHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MWRSRKPEIPADVRLSFLRALYGNRTTLWFGLLAHVVACVVIYVKTADWHFLGFAGIFTF
CCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHH
VAFGRLYDMHKFDQAKLTAISHDDLDKWEAHYLIGASLVCATLGMLCFFSSYVLRDAFAE
HHHHHHHHHHHCCCHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LASLTVLLASVVSIVGRNYASAKAVILMSVCTLMPVLAGLILAGTPFHIIIGLLLIPYFL
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
SNIQMANGLREFLFAAVMGKRRLSIVAGRFDAALNNMPQGLLMFDGEQRIAVINNKAKAM
HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEECCHHHHH
MRIAEHTKLHGRKLEVLLRYCVKQGLFPHNDLTNIRLRMEDILMGRKARDIFQLSDRRYI
HHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCHHHEEHHHHHHCCHHHHHHHHCCCHHH
ECIGNQTVSSGAVMMFEDVTQRVESEARIQHMARFDGLTGLPNRNYFETMMRSLRPHQDQ
HHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCC
NSKVALIVIDINHFKHVNDTLGHHTGDVLLRLFAERLNSLDPQRYVASRFGGDEFVIFVF
CCEEEEEEEECCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEEEE
NLHDSSEVNGMMEHIISAVKGVYDLDGAQVDIDISAGVAIEDIDKCDVGNMHIKADLALY
ECCCCHHHHHHHHHHHHHHCCCEECCCCEEEEEEECCCEEECCCCCCCCCEEEEEEEEEE
EAKGEENRQWAAFVGAMDTKYRSRQKLKADLRQAVAQREIHVAYQPIVSAQSLRIVACEA
ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
LARWNHAELGLVPPAEFIPLAEEIGLISEITRFMLEQACMDCLSWGDKIVVSVNLSAIDL
HHCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEE
KNNDIARDIAYALEKSGLPAHRLEVEVTESAIIADRNKTSLVLQRLKNAGINIALDDFGT
CCCCHHHHHHHHHHHCCCCCCEEEEEEECCEEEECCCHHHHHHHHHHHCCCEEEECCCCC
GYSSLSYLNTLPLTKVKVDRSFVRDITSDRRSLMLLRGVTQLSHELGLGVTVEGVETEEQ
CHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHH
LALIRVAAGADLVQGYLFGMPLPTEEISVLTAKSMVRRAGGRTVA
HHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]