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The map label for this gene is ybaO [C]

Identifier: 225686662

GI number: 225686662

Start: 860999

End: 861436

Strand: Direct

Name: ybaO [C]

Synonym: BMEA_B0882

Alternate gene names: 225686662

Gene position: 860999-861436 (Clockwise)

Preceding gene: 225686659

Following gene: 225686667

Centisome position: 72.63

GC content: 60.73

Gene sequence:

>438_bases
ATGGACGATCTGGACGAAAAGCTGATTACGCTTCTGCGTCATAACGGCAGGCGCAGCATCTCGGATATCGCCATCGATCT
TGGCGTTTCGCGCGCAACAGTGTGCGCGCGCATGGAACGGCTCGAACGGTCCGGCGATATATTGGGCTATACGGTTATCC
TGCGCTCCGACGCGGTGGACCTGCCGGTGCGCGGCATCATGATGATCGAAATCGAAGGCCATGTGGCAGACCGCGTGGTC
AAGGCGCTGGGCGGATTTTCGGAAATATCGGCCATCCACACCACCAATGGCCGCTTCGATCTGGTGGTGGAACTGGGCGC
TGCCACGCTGACCGATTTCGACGCCGTGCTGCGTCGTATCCGGCTGGTGCCGGGCATCAAGGCCAGTGAGACCAACCTGC
TGCTGGCCACACCACGTTCAACCCGCGCCCGGCTATAA

Upstream 100 bases:

>100_bases
AATTGACCATTTATGCTTGGCGATGTGAACCAACCGGATTGGCAATTTTCTCGGTTTGGTTTATCAGAATGTCGGATTGG
CTTTTCAAAATGGAGAAAGC

Downstream 100 bases:

>100_bases
AACAAAGGCCGGAAAACCCCGGCCCTTGCTCAATCCATCATGCCAGAACGGGATAATCCGTATAGCCCTTTGCCCCGCCA
CCATACATATGTTTCTGGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MDDLDEKLITLLRHNGRRSISDIAIDLGVSRATVCARMERLERSGDILGYTVILRSDAVDLPVRGIMMIEIEGHVADRVV
KALGGFSEISAIHTTNGRFDLVVELGAATLTDFDAVLRRIRLVPGIKASETNLLLATPRSTRARL

Sequences:

>Translated_145_residues
MDDLDEKLITLLRHNGRRSISDIAIDLGVSRATVCARMERLERSGDILGYTVILRSDAVDLPVRGIMMIEIEGHVADRVV
KALGGFSEISAIHTTNGRFDLVVELGAATLTDFDAVLRRIRLVPGIKASETNLLLATPRSTRARL
>Mature_145_residues
MDDLDEKLITLLRHNGRRSISDIAIDLGVSRATVCARMERLERSGDILGYTVILRSDAVDLPVRGIMMIEIEGHVADRVV
KALGGFSEISAIHTTNGRFDLVVELGAATLTDFDAVLRRIRLVPGIKASETNLLLATPRSTRARL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR001845
- InterPro:   IPR000485
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF01022 HTH_5 [H]

EC number: NA

Molecular weight: Translated: 15907; Mature: 15907

Theoretical pI: Translated: 7.62; Mature: 7.62

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDLDEKLITLLRHNGRRSISDIAIDLGVSRATVCARMERLERSGDILGYTVILRSDAVD
CCHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCC
LPVRGIMMIEIEGHVADRVVKALGGFSEISAIHTTNGRFDLVVELGAATLTDFDAVLRRI
CCCCCEEEEEECCHHHHHHHHHHCCHHHHHEEEECCCCEEEEEEECCCHHHHHHHHHHHH
RLVPGIKASETNLLLATPRSTRARL
HHCCCCCCCCCEEEEECCCCCCCCC
>Mature Secondary Structure
MDDLDEKLITLLRHNGRRSISDIAIDLGVSRATVCARMERLERSGDILGYTVILRSDAVD
CCHHHHHHHHHHHCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCC
LPVRGIMMIEIEGHVADRVVKALGGFSEISAIHTTNGRFDLVVELGAATLTDFDAVLRRI
CCCCCEEEEEECCHHHHHHHHHHCCHHHHHEEEECCCCEEEEEEECCCHHHHHHHHHHHH
RLVPGIKASETNLLLATPRSTRARL
HHCCCCCCCCCEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12622808 [H]