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The map label for this gene is ybiH [H]

Identifier: 225686265

GI number: 225686265

Start: 429640

End: 430359

Strand: Direct

Name: ybiH [H]

Synonym: BMEA_B0440

Alternate gene names: 225686265

Gene position: 429640-430359 (Clockwise)

Preceding gene: 225686264

Following gene: 225686266

Centisome position: 36.24

GC content: 59.44

Gene sequence:

>720_bases
ATGGCTGATAGCGAAGACAAGAAGCCGCCGCAGGCCTCTTTATCGAGTGAGCAAACACGCAAGGCATTGATTGTCGCTGC
CCTGCGCCTCTTTGGTGCCAAGGGCTACGAGGCAACCTCGACCCGCGAGATTGCGTCACTTGCCAAGGCGAATATTGGCT
CGATCGCCTATCATTTCGGCGGCAAGGAAGGGCTGCGGCTTGCCGCTGCCGATTATATTGTCGAAACCTTCCGGCTGATC
GCGGCGCAGGCGCTGGGCAATTTCCAGCCCGCTGGCTTCTCCCGCGAAGAGCGGGAAGATGCGCGGGCGCAAATGATATC
GGCGCTGGAGCGTATGGTGCACTTTATTGTTGCGCGGCCGGAAACGGGTGAAATCGTCCAGTTCCTGTTGCGTGAGCTTG
CGCATCCTACGGCTGCACTCGACCGCATCTATAAGGGAGTGTTCGAGCCGGTACACAAGCGGCTGTGCATGATCTGGGAG
GCTGCGACCGGCGAGGCTGCGGAAAGTGAGGCGACGCGGCTGGTCGTTTTTACGCTGGTCGGGCAGATATTCTATTTCCG
CATCGCACAGGAAGCTGTGAAACGCCGCATGAACTGGCCGGTTATGGGGTCAGATCAGGCCGATATGGTCGCGGGCGTTG
TGAAACAAAATCTTGCCGCCATGCTGGATGCGCGCGGCCCCACAGGCGCACAACAGCCTGTGGCTGACGGGGGGAAATAA

Upstream 100 bases:

>100_bases
TGCTTGATGTTGTGGCAGGCCCGATTTGTGCCGGTCATTCCCCGTTAGGCCCCGCTGCTCTCTGCTTGACATTTAATCAA
TCGATTGATTAAATCGCCAA

Downstream 100 bases:

>100_bases
TGCGATGAGCCTGCTTTGTGTCATTCCGTTCGTTTCATCGCTTTTTGCCGCTTGCGGCACACAATCGCTGGCGGTTGGCT
ATGTGGAGGGCGAATTCGTC

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MADSEDKKPPQASLSSEQTRKALIVAALRLFGAKGYEATSTREIASLAKANIGSIAYHFGGKEGLRLAAADYIVETFRLI
AAQALGNFQPAGFSREEREDARAQMISALERMVHFIVARPETGEIVQFLLRELAHPTAALDRIYKGVFEPVHKRLCMIWE
AATGEAAESEATRLVVFTLVGQIFYFRIAQEAVKRRMNWPVMGSDQADMVAGVVKQNLAAMLDARGPTGAQQPVADGGK

Sequences:

>Translated_239_residues
MADSEDKKPPQASLSSEQTRKALIVAALRLFGAKGYEATSTREIASLAKANIGSIAYHFGGKEGLRLAAADYIVETFRLI
AAQALGNFQPAGFSREEREDARAQMISALERMVHFIVARPETGEIVQFLLRELAHPTAALDRIYKGVFEPVHKRLCMIWE
AATGEAAESEATRLVVFTLVGQIFYFRIAQEAVKRRMNWPVMGSDQADMVAGVVKQNLAAMLDARGPTGAQQPVADGGK
>Mature_238_residues
ADSEDKKPPQASLSSEQTRKALIVAALRLFGAKGYEATSTREIASLAKANIGSIAYHFGGKEGLRLAAADYIVETFRLIA
AQALGNFQPAGFSREEREDARAQMISALERMVHFIVARPETGEIVQFLLRELAHPTAALDRIYKGVFEPVHKRLCMIWEA
ATGEAAESEATRLVVFTLVGQIFYFRIAQEAVKRRMNWPVMGSDQADMVAGVVKQNLAAMLDARGPTGAQQPVADGGK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081783, Length=220, Percent_Identity=33.6363636363636, Blast_Score=105, Evalue=2e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647
- InterPro:   IPR015292 [H]

Pfam domain/function: PF09209 DUF1956; PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 26080; Mature: 25949

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADSEDKKPPQASLSSEQTRKALIVAALRLFGAKGYEATSTREIASLAKANIGSIAYHFG
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
GKEGLRLAAADYIVETFRLIAAQALGNFQPAGFSREEREDARAQMISALERMVHFIVARP
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
ETGEIVQFLLRELAHPTAALDRIYKGVFEPVHKRLCMIWEAATGEAAESEATRLVVFTLV
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
GQIFYFRIAQEAVKRRMNWPVMGSDQADMVAGVVKQNLAAMLDARGPTGAQQPVADGGK
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ADSEDKKPPQASLSSEQTRKALIVAALRLFGAKGYEATSTREIASLAKANIGSIAYHFG
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
GKEGLRLAAADYIVETFRLIAAQALGNFQPAGFSREEREDARAQMISALERMVHFIVARP
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
ETGEIVQFLLRELAHPTAALDRIYKGVFEPVHKRLCMIWEAATGEAAESEATRLVVFTLV
CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
GQIFYFRIAQEAVKRRMNWPVMGSDQADMVAGVVKQNLAAMLDARGPTGAQQPVADGGK
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8037924; 8905232; 9278503 [H]