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The map label for this gene is ydcN [H]

Identifier: 225853293

GI number: 225853293

Start: 1800821

End: 1802773

Strand: Direct

Name: ydcN [H]

Synonym: BMEA_A1902

Alternate gene names: 225853293

Gene position: 1800821-1802773 (Clockwise)

Preceding gene: 225853292

Following gene: 225853294

Centisome position: 84.72

GC content: 52.74

Gene sequence:

>1953_bases
ATGTCGAACTCAGCAGAAATTGGCATGAATCTAGCGCGTTTGCGCAAGCGCCGCGGGTTGACCTTGGATGGATTAGCCGA
ATTGAGTTCAATCAGTCGCGCGGCTATTTCAGCACTGGAAAATGGAGCGGGTAACCCTCGCCTCGAGACCCTTTGGAGTT
TGGCTAACGCTTTGGGTATCGAGTTTGGAGAATTGGTTGGCGCCCGCAATGATGTGGAAGTGGTCGAAGCTGACGGTATA
AGTGTGCGGTTGATCGATCGCCAAACACGCCCCAGAACAGTTGAAGCATTCCTGCTTGATTTGCCTGCCAATGCCAAACG
TCACGCCGATGCTCATGTTCATGGAGTCAGCGAAAATGTTGTTGTTCTATCCGGAGCGATAGCAGTCGGGCCGCTCAGCA
CACCAATGCTTTTGCATGCTGGCCAATCACATCAATTCGCGGCGGACGTGCCGCACATCTATTCGTCCGGTGCAGAACCC
AGTCGCGCCATCGTTACTATCATATATCCCGAAGATGACACCGCCCTGACATCTGAGGATCAGGAACTAGAGTGGCCTGT
AGGCAAAGACGAGTGGGCAAATGTCCGCGCCCAACTTAACCGCGCTAGAATTGAGGTCCAAAACGGTTACGCCCACTCGC
GCATTACCTTTAAAAGCGCACCCGAACCGTTGCAGTCGGCTATTCGGTTGATTGAGGATGAGTTGGCCACGAGGAGCGGT
ATCGCAGAAACCGCAAAAGTTTTCGTTACCGGGAACCGGACGCCCGCTATTGCGACGTTCTATCGGACGACGCAAATGCG
CCCGCTTCCGATTAATGAGCAACTCGCAACTCCCCTAATCACCAACTGCCGAGAGTTGGCTAATGCAGCGATAACTCCAT
GGCTTGCCAAGAAGGTAGATGCAGATGACCTGCACGCCAAGTCTCAAAACTCGACGCACATCATAGAGGCAGCGCTTGCC
GCAGAAGTATTGACGCGCCTGGGACGTCCGACGGTGCCAACCGGGATCTCTCAAAAACAAGTCACGCCGAAACAGTCGCC
CCTGATGGACCGCATGTTCGAAGATCGTATCGATGTCGATGTGTATGAAGCTTACGAACTCGTTCACCCCGCTTATGCTC
GACAGGTTCTAGCGGTGGCCGAGACGCTGCCAGTTTTTGCCACCAAGTCTGATCAAACAATTTTAGACGTCGGGACAGGT
CCAGGACTGCCTTTACAGATGCTGCTGGAGTTGCGGCCAGAACTCCATGTGGTAGCAATCGATCCCAGCGAAATTGCCAA
TGTTCACTTGTCCCGACGTTTTGCTGATGATAGTCGCGTTCAGGCCGTTCAGGCTTCGATAATCGACTATCGTCCAGCAG
ATTATCTCTTCGATGCTGCCGTTTCGATCGGGGCTTCTCATCATCTGGATACTAAGCAGTTTCTTTCAAGCATTCATGAA
TGCCTTGCTGCGGAAGGCGTCCTTGTCATTGCCGACGAAATGTTGGCGCCTTTTCGCGATCGGCGAGAGCGCAATCTAGC
ATTGGTGACCCACCATCTGTGGTACATTCTCGATACGCTGTTCGATCTTCCTGCCAGTAGTTCCGAAGCAGAGCGAGCTG
TTTGTGATATCCTAAAACAGGGCCTTCCTCCGGCAATGTCTTTAGCGCTTTCAGGTCGCTCGGAAGCCGCAACTCGACAG
GTACGAGAGACATTCAAAGCCGCGACGGATATTGATCTCGGAAATGCACTTGTTGCACGTGAGGCTGCCTTCAATCGTTT
CCACCTGCTTGAACTCCAGGCACTTGTTGCCGGTCTAGACTACGAAGTCGAGCAAAAGACATACCCTGCGCGATTTGTGA
GCTTGGCTGAATCTAGCGGGTTCTCTCTTCTTCAACACAGGCGCATTTATGCCACCCAAGGCGACGGATCTTATGATGCC
GGCACACATCTCTTTGTTATGGTGAAGCGATGA

Upstream 100 bases:

>100_bases
CTCAAGCGATTGCCCTGCTCTAAATGTCGGGAGATATTGCCCATCCTGTAATAGTCAATTATAATGGAATTTCTATTATA
ATTGACTTTTTGGGGTGACT

Downstream 100 bases:

>100_bases
CAGAGCGCTGGCGTCAATTCTTCCATGGAGCGCGTTCGGCTATCCCAATCATTCTTGGCTATTTGCCCGTAGCGTTTGCG
TTCGGAACTGCGGCAAGTGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 650; Mature: 649

Protein sequence:

>650_residues
MSNSAEIGMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELVGARNDVEVVEADGI
SVRLIDRQTRPRTVEAFLLDLPANAKRHADAHVHGVSENVVVLSGAIAVGPLSTPMLLHAGQSHQFAADVPHIYSSGAEP
SRAIVTIIYPEDDTALTSEDQELEWPVGKDEWANVRAQLNRARIEVQNGYAHSRITFKSAPEPLQSAIRLIEDELATRSG
IAETAKVFVTGNRTPAIATFYRTTQMRPLPINEQLATPLITNCRELANAAITPWLAKKVDADDLHAKSQNSTHIIEAALA
AEVLTRLGRPTVPTGISQKQVTPKQSPLMDRMFEDRIDVDVYEAYELVHPAYARQVLAVAETLPVFATKSDQTILDVGTG
PGLPLQMLLELRPELHVVAIDPSEIANVHLSRRFADDSRVQAVQASIIDYRPADYLFDAAVSIGASHHLDTKQFLSSIHE
CLAAEGVLVIADEMLAPFRDRRERNLALVTHHLWYILDTLFDLPASSSEAERAVCDILKQGLPPAMSLALSGRSEAATRQ
VRETFKAATDIDLGNALVAREAAFNRFHLLELQALVAGLDYEVEQKTYPARFVSLAESSGFSLLQHRRIYATQGDGSYDA
GTHLFVMVKR

Sequences:

>Translated_650_residues
MSNSAEIGMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELVGARNDVEVVEADGI
SVRLIDRQTRPRTVEAFLLDLPANAKRHADAHVHGVSENVVVLSGAIAVGPLSTPMLLHAGQSHQFAADVPHIYSSGAEP
SRAIVTIIYPEDDTALTSEDQELEWPVGKDEWANVRAQLNRARIEVQNGYAHSRITFKSAPEPLQSAIRLIEDELATRSG
IAETAKVFVTGNRTPAIATFYRTTQMRPLPINEQLATPLITNCRELANAAITPWLAKKVDADDLHAKSQNSTHIIEAALA
AEVLTRLGRPTVPTGISQKQVTPKQSPLMDRMFEDRIDVDVYEAYELVHPAYARQVLAVAETLPVFATKSDQTILDVGTG
PGLPLQMLLELRPELHVVAIDPSEIANVHLSRRFADDSRVQAVQASIIDYRPADYLFDAAVSIGASHHLDTKQFLSSIHE
CLAAEGVLVIADEMLAPFRDRRERNLALVTHHLWYILDTLFDLPASSSEAERAVCDILKQGLPPAMSLALSGRSEAATRQ
VRETFKAATDIDLGNALVAREAAFNRFHLLELQALVAGLDYEVEQKTYPARFVSLAESSGFSLLQHRRIYATQGDGSYDA
GTHLFVMVKR
>Mature_649_residues
SNSAEIGMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGIEFGELVGARNDVEVVEADGIS
VRLIDRQTRPRTVEAFLLDLPANAKRHADAHVHGVSENVVVLSGAIAVGPLSTPMLLHAGQSHQFAADVPHIYSSGAEPS
RAIVTIIYPEDDTALTSEDQELEWPVGKDEWANVRAQLNRARIEVQNGYAHSRITFKSAPEPLQSAIRLIEDELATRSGI
AETAKVFVTGNRTPAIATFYRTTQMRPLPINEQLATPLITNCRELANAAITPWLAKKVDADDLHAKSQNSTHIIEAALAA
EVLTRLGRPTVPTGISQKQVTPKQSPLMDRMFEDRIDVDVYEAYELVHPAYARQVLAVAETLPVFATKSDQTILDVGTGP
GLPLQMLLELRPELHVVAIDPSEIANVHLSRRFADDSRVQAVQASIIDYRPADYLFDAAVSIGASHHLDTKQFLSSIHEC
LAAEGVLVIADEMLAPFRDRRERNLALVTHHLWYILDTLFDLPASSSEAERAVCDILKQGLPPAMSLALSGRSEAATRQV
RETFKAATDIDLGNALVAREAAFNRFHLLELQALVAGLDYEVEQKTYPARFVSLAESSGFSLLQHRRIYATQGDGSYDAG
THLFVMVKR

Specific function: Unknown

COG id: COG1396

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787704, Length=176, Percent_Identity=28.4090909090909, Blast_Score=74, Evalue=4e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 71167; Mature: 71035

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNSAEIGMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGI
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
EFGELVGARNDVEVVEADGISVRLIDRQTRPRTVEAFLLDLPANAKRHADAHVHGVSENV
CHHHHHCCCCCCEEEECCCCEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCEECCCCCE
VVLSGAIAVGPLSTPMLLHAGQSHQFAADVPHIYSSGAEPSRAIVTIIYPEDDTALTSED
EEEECCEEECCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCCCCCCCC
QELEWPVGKDEWANVRAQLNRARIEVQNGYAHSRITFKSAPEPLQSAIRLIEDELATRSG
CCCCCCCCCCHHHHHHHHHHHHEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCC
IAETAKVFVTGNRTPAIATFYRTTQMRPLPINEQLATPLITNCRELANAAITPWLAKKVD
CCCEEEEEEECCCCCEEEEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHCCHHHHHCCC
ADDLHAKSQNSTHIIEAALAAEVLTRLGRPTVPTGISQKQVTPKQSPLMDRMFEDRIDVD
CHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCH
VYEAYELVHPAYARQVLAVAETLPVFATKSDQTILDVGTGPGLPLQMLLELRPELHVVAI
HHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEECCCCCCHHHHHHHCCCCEEEEEE
DPSEIANVHLSRRFADDSRVQAVQASIIDYRPADYLFDAAVSIGASHHLDTKQFLSSIHE
CHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH
CLAAEGVLVIADEMLAPFRDRRERNLALVTHHLWYILDTLFDLPASSSEAERAVCDILKQ
HHHHCCEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
GLPPAMSLALSGRSEAATRQVRETFKAATDIDLGNALVAREAAFNRFHLLELQALVAGLD
CCCHHHHHEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCC
YEVEQKTYPARFVSLAESSGFSLLQHRRIYATQGDGSYDAGTHLFVMVKR
CEECCCCCHHHHHHHHHCCCHHHHHCCEEEEECCCCCCCCCCEEEEEEEC
>Mature Secondary Structure 
SNSAEIGMNLARLRKRRGLTLDGLAELSSISRAAISALENGAGNPRLETLWSLANALGI
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
EFGELVGARNDVEVVEADGISVRLIDRQTRPRTVEAFLLDLPANAKRHADAHVHGVSENV
CHHHHHCCCCCCEEEECCCCEEEEECCCCCCCEEEEEEEECCCCCCCCCCCCEECCCCCE
VVLSGAIAVGPLSTPMLLHAGQSHQFAADVPHIYSSGAEPSRAIVTIIYPEDDTALTSED
EEEECCEEECCCCCCCEEECCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCCCCCCCC
QELEWPVGKDEWANVRAQLNRARIEVQNGYAHSRITFKSAPEPLQSAIRLIEDELATRSG
CCCCCCCCCCHHHHHHHHHHHHEEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCC
IAETAKVFVTGNRTPAIATFYRTTQMRPLPINEQLATPLITNCRELANAAITPWLAKKVD
CCCEEEEEEECCCCCEEEEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHCCHHHHHCCC
ADDLHAKSQNSTHIIEAALAAEVLTRLGRPTVPTGISQKQVTPKQSPLMDRMFEDRIDVD
CHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCH
VYEAYELVHPAYARQVLAVAETLPVFATKSDQTILDVGTGPGLPLQMLLELRPELHVVAI
HHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEECCCCCCHHHHHHHCCCCEEEEEE
DPSEIANVHLSRRFADDSRVQAVQASIIDYRPADYLFDAAVSIGASHHLDTKQFLSSIHE
CHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHH
CLAAEGVLVIADEMLAPFRDRRERNLALVTHHLWYILDTLFDLPASSSEAERAVCDILKQ
HHHHCCEEEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
GLPPAMSLALSGRSEAATRQVRETFKAATDIDLGNALVAREAAFNRFHLLELQALVAGLD
CCCHHHHHEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHCCC
YEVEQKTYPARFVSLAESSGFSLLQHRRIYATQGDGSYDAGTHLFVMVKR
CEECCCCCHHHHHHHHHCCCHHHHHCCEEEEECCCCCCCCCCEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]