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The map label for this gene is yafC [H]

Identifier: 225853275

GI number: 225853275

Start: 1783792

End: 1784718

Strand: Direct

Name: yafC [H]

Synonym: BMEA_A1882

Alternate gene names: 225853275

Gene position: 1783792-1784718 (Clockwise)

Preceding gene: 225853270

Following gene: 225853292

Centisome position: 83.92

GC content: 61.81

Gene sequence:

>927_bases
ATGATCCGAAAGGGATCGGGGATGCCTGCTCAAGCAAAGAACGCCATGAACTGGGATGATATCCGCATATTCCTCGCTGT
TGCCCGCTCCGGCCAGATTCTGGGCGCCGCCAGGCGGCTCGGCCTCAATCACACCACGGTGGCGCGCCGCCTCACCGCGC
TTGAAACAGCCCTTTCCACCACACTTCTGACGCGGCGCACCAACGGGTCCACGCTGACACATGCGGGCGAGGAGTTTCTG
CTTGCCGCCGAGCGCATGGAAGCCGAAATGCTTTCCGCCCGCGCGCAGGTGGGCAATGCCGATATTGCCGTTTCGGGCAC
GGTGCGCATCGGCGCGCCAGACGGGTTCGGGGTCAATTTCCTGGCGCCCCGGCTGGCGCGGCTGACGCAGAAATATCCCG
ATCTCACCATCCAGCTGGTGCCGGTGCCGCGCTCTTTTTCGCTATCGCGCCGCGAGGCGGATATCGCCATCACAGTGGAG
CGCCCGGATCAGGGACGGCTCGTCGCGCGCAGGCTCGTCGATTATACGCTCTGTCTTTATGCCCATCGCAGCTATCTGGA
AGAAAACAGCACGCCGAAAAGCCCCGAAGACCTCAATCGCCACCGGCTGATCGGCTATGTGGAAGATCTGGTCATCAATC
CATCGCTGGCCTATGCGCCGGAAATCAGCCGCGACTGGAAGCCAGCCTTTGAAGTGTCAAGCTCACTCGGCCAGGTGGAG
GCCGTGCGGGCCGGTGCGGGCATTGGCATATTGCATTCCTTCATCGCGTGTGCCGATCCCGATCTGGTCCCGGTTCTGCC
CGACCGGGTGATCCACCGCGCCTATTGGCTTGCCTATCACGAATCCGCGCGCACATTGCGCCGTGTCACAGCCGTTTCGG
CGCTCATTTCGGAACTGGTGGAAAGCGAAAAATCGCTGTTCAGTTAA

Upstream 100 bases:

>100_bases
ACCTCCCTGATGTCGTTGCCCTATCCTGACTCTGCAAATTCATCATTGCAAGGCACTGAAAAGCGTATCCGTTGTGCATT
TTTTATAGTAAGGAAAGCGC

Downstream 100 bases:

>100_bases
GCATGATCCCGAAAAGTGGAAGCCGGTTTTCGGATCAGATCATGCTAGGCTGTAGTGACGAGTTAACTTGTGATTTGGTA
TGGGCAAAAAACCTCCATCT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MIRKGSGMPAQAKNAMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHAGEEFL
LAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDLTIQLVPVPRSFSLSRREADIAITVE
RPDQGRLVARRLVDYTLCLYAHRSYLEENSTPKSPEDLNRHRLIGYVEDLVINPSLAYAPEISRDWKPAFEVSSSLGQVE
AVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAYWLAYHESARTLRRVTAVSALISELVESEKSLFS

Sequences:

>Translated_308_residues
MIRKGSGMPAQAKNAMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHAGEEFL
LAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDLTIQLVPVPRSFSLSRREADIAITVE
RPDQGRLVARRLVDYTLCLYAHRSYLEENSTPKSPEDLNRHRLIGYVEDLVINPSLAYAPEISRDWKPAFEVSSSLGQVE
AVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAYWLAYHESARTLRRVTAVSALISELVESEKSLFS
>Mature_308_residues
MIRKGSGMPAQAKNAMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALSTTLLTRRTNGSTLTHAGEEFL
LAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNFLAPRLARLTQKYPDLTIQLVPVPRSFSLSRREADIAITVE
RPDQGRLVARRLVDYTLCLYAHRSYLEENSTPKSPEDLNRHRLIGYVEDLVINPSLAYAPEISRDWKPAFEVSSSLGQVE
AVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAYWLAYHESARTLRRVTAVSALISELVESEKSLFS

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=25.4295532646048, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1789639, Length=237, Percent_Identity=29.535864978903, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1789440, Length=270, Percent_Identity=25.9259259259259, Blast_Score=81, Evalue=1e-16,
Organism=Escherichia coli, GI145693193, Length=195, Percent_Identity=28.2051282051282, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787601, Length=174, Percent_Identity=25.8620689655172, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI87081978, Length=181, Percent_Identity=28.1767955801105, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1789173, Length=300, Percent_Identity=22.6666666666667, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1787128, Length=247, Percent_Identity=23.4817813765182, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33867; Mature: 33867

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRKGSGMPAQAKNAMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALST
CCCCCCCCCHHHCCCCCHHHHEEEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHH
TLLTRRTNGSTLTHAGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNF
HHHEECCCCCEEHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHH
LAPRLARLTQKYPDLTIQLVPVPRSFSLSRREADIAITVERPDQGRLVARRLVDYTLCLY
HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
AHRSYLEENSTPKSPEDLNRHRLIGYVEDLVINPSLAYAPEISRDWKPAFEVSSSLGQVE
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCHHH
AVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAYWLAYHESARTLRRVTAVSALISELV
HHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESEKSLFS
HHHHHHCC
>Mature Secondary Structure
MIRKGSGMPAQAKNAMNWDDIRIFLAVARSGQILGAARRLGLNHTTVARRLTALETALST
CCCCCCCCCHHHCCCCCHHHHEEEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHH
TLLTRRTNGSTLTHAGEEFLLAAERMEAEMLSARAQVGNADIAVSGTVRIGAPDGFGVNF
HHHEECCCCCEEHHCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCHHH
LAPRLARLTQKYPDLTIQLVPVPRSFSLSRREADIAITVERPDQGRLVARRLVDYTLCLY
HHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHH
AHRSYLEENSTPKSPEDLNRHRLIGYVEDLVINPSLAYAPEISRDWKPAFEVSSSLGQVE
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCHHH
AVRAGAGIGILHSFIACADPDLVPVLPDRVIHRAYWLAYHESARTLRRVTAVSALISELV
HHHCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ESEKSLFS
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]