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The map label for this gene is ybaO [H]

Identifier: 225853136

GI number: 225853136

Start: 1638730

End: 1639200

Strand: Reverse

Name: ybaO [H]

Synonym: BMEA_A1729

Alternate gene names: 225853136

Gene position: 1639200-1638730 (Counterclockwise)

Preceding gene: 225853139

Following gene: 225853135

Centisome position: 77.11

GC content: 56.48

Gene sequence:

>471_bases
ATGACAGCATCTATGGACGATATAGACCGAAAAATCCTGGCTGAGTTGCAAAACGACGGCACTTTGTCGGTTGATTCCCT
TTCCGAACGGGTGAATCTTTCGCGCAATGCCTGCTGGCGGCGCGTAAAGCGCATGGAAGACGATGGCGTCATCAAAGGTC
GCGTGGCGCTGGTGGATGCGGAAATGGTCGGCTATGGCCTCTCGGTTTTCATTCTGGTGCGCACCTCCGCCCATGATCCC
GAATGGCTGAACAAATTCCGCGCTGCCGTGGCTCGCTTCCCGGAAATCGTCGGCGCCTATCGCATGACCGGCGATCTGGA
CTATGTGCTGAAGGCACGCATTTCCGATGTCAGAGCTTATGACCGGCTCTACCAGCGCCTCATAGCCTGTGTACCGCTAT
CGGATGTATCGGCCTCTTTCGTGATGGAAGAGATCAAGGACACCACAGCCGTCCCGCTGGATGGGCGTTAG

Upstream 100 bases:

>100_bases
TGAAAAGCACCGTTTAAGAAAATCATTTTAGCAAAGCCACTGGGAATGAAATCTCAAAATATCCTTGATATCCGCTTTAA
CTTGGGACAAAACTCCCATT

Downstream 100 bases:

>100_bases
AACGATCTGTCGGTGCTGGGGGGCTGGGCACTAGAAACAGAACCCTGTAACGCACTATCATGGTAAAACACCAAATTGGC
GGTACACCTTTGATGCATTT

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 155

Protein sequence:

>156_residues
MTASMDDIDRKILAELQNDGTLSVDSLSERVNLSRNACWRRVKRMEDDGVIKGRVALVDAEMVGYGLSVFILVRTSAHDP
EWLNKFRAAVARFPEIVGAYRMTGDLDYVLKARISDVRAYDRLYQRLIACVPLSDVSASFVMEEIKDTTAVPLDGR

Sequences:

>Translated_156_residues
MTASMDDIDRKILAELQNDGTLSVDSLSERVNLSRNACWRRVKRMEDDGVIKGRVALVDAEMVGYGLSVFILVRTSAHDP
EWLNKFRAAVARFPEIVGAYRMTGDLDYVLKARISDVRAYDRLYQRLIACVPLSDVSASFVMEEIKDTTAVPLDGR
>Mature_155_residues
TASMDDIDRKILAELQNDGTLSVDSLSERVNLSRNACWRRVKRMEDDGVIKGRVALVDAEMVGYGLSVFILVRTSAHDPE
WLNKFRAAVARFPEIVGAYRMTGDLDYVLKARISDVRAYDRLYQRLIACVPLSDVSASFVMEEIKDTTAVPLDGR

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=151, Percent_Identity=48.3443708609272, Blast_Score=172, Evalue=1e-44,
Organism=Escherichia coli, GI1787116, Length=153, Percent_Identity=36.6013071895425, Blast_Score=103, Evalue=7e-24,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17544; Mature: 17413

Theoretical pI: Translated: 5.32; Mature: 5.32

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASMDDIDRKILAELQNDGTLSVDSLSERVNLSRNACWRRVKRMEDDGVIKGRVALVDA
CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCEEECEEEEEEH
EMVGYGLSVFILVRTSAHDPEWLNKFRAAVARFPEIVGAYRMTGDLDYVLKARISDVRAY
HHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
DRLYQRLIACVPLSDVSASFVMEEIKDTTAVPLDGR
HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TASMDDIDRKILAELQNDGTLSVDSLSERVNLSRNACWRRVKRMEDDGVIKGRVALVDA
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCEEECEEEEEEH
EMVGYGLSVFILVRTSAHDPEWLNKFRAAVARFPEIVGAYRMTGDLDYVLKARISDVRAY
HHHHCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
DRLYQRLIACVPLSDVSASFVMEEIKDTTAVPLDGR
HHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]