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The map label for this gene is exbD [H]

Identifier: 225853131

GI number: 225853131

Start: 1632446

End: 1632970

Strand: Direct

Name: exbD [H]

Synonym: BMEA_A1723

Alternate gene names: 225853131

Gene position: 1632446-1632970 (Clockwise)

Preceding gene: 225853130

Following gene: 225853132

Centisome position: 76.8

GC content: 60.95

Gene sequence:

>525_bases
ATGGCCGGTAAGGTTCGCGAAGGCGGCGGGGACGATCTCGAACTTAATCACGAGATCAATGTGACCCCCTTCATCGATGT
CATGCTGGTGCTGCTCATCATCTTCATGGTGGCAGCACCGCTGGCCACCGTGGATGTGAAGGTGGATCTGCCCGCATCTG
CGGCAGCGCCCGCGCCGCGCCCCGACAAGCCGCTTTATGTGACGCTGAAGGAGGATCTCAGCGTCAGCGTTGGCAATGAT
ACGGTCGCGCGGGAACGCCTTGGCGCTGCCCTCGACGGTTTGTCTGAAAAGGATAAGGAGACCCGCATCTTCCTGCGTGC
CGACAAGAATGTCGCTTATGGCGAACTGATGCGGGTGATGAATCTGCTACGCGAAGCTGGCTATCTGAAGATTGCGCTGG
TTGGACTTGAAACGGTTGGTGCGGATCAGCCGAATGCCGCGCCGGCGTCGCCAGCGGCAGGCCCGGCAATTGCTCCTGAG
GGGGCTGCGCAATGGATGCACCTGCGCCCGTCCACCCTCCCGTAA

Upstream 100 bases:

>100_bases
CCGATGCCTCGGCTGGTGTTGAGCGGCTCGTGAGCCGCGATCTGGATTTCAGGACGGCAGGCGTGCGTGAAGGCACGCTG
CACGCTGCGGAGTAAGCATT

Downstream 100 bases:

>100_bases
AGGTGGCCCGGACCGACAGCTACGATCATTCCTTCTGGCGTGATGCGGGGCGCTGGCTCGGCGCGGGCATACTTGTGCTG
TTGGTCCATGCGGCGGGGGC

Product: TonB system transport protein ExbD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MAGKVREGGGDDLELNHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVDLPASAAAPAPRPDKPLYVTLKEDLSVSVGND
TVARERLGAALDGLSEKDKETRIFLRADKNVAYGELMRVMNLLREAGYLKIALVGLETVGADQPNAAPASPAAGPAIAPE
GAAQWMHLRPSTLP

Sequences:

>Translated_174_residues
MAGKVREGGGDDLELNHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVDLPASAAAPAPRPDKPLYVTLKEDLSVSVGND
TVARERLGAALDGLSEKDKETRIFLRADKNVAYGELMRVMNLLREAGYLKIALVGLETVGADQPNAAPASPAAGPAIAPE
GAAQWMHLRPSTLP
>Mature_173_residues
AGKVREGGGDDLELNHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVDLPASAAAPAPRPDKPLYVTLKEDLSVSVGNDT
VARERLGAALDGLSEKDKETRIFLRADKNVAYGELMRVMNLLREAGYLKIALVGLETVGADQPNAAPASPAAGPAIAPEG
AAQWMHLRPSTLP

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=141, Percent_Identity=60.9929078014184, Blast_Score=166, Evalue=7e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400
- InterPro:   IPR014170 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 18418; Mature: 18286

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGKVREGGGDDLELNHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVDLPASAAAPAPR
CCCCCCCCCCCCEEECCEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC
PDKPLYVTLKEDLSVSVGNDTVARERLGAALDGLSEKDKETRIFLRADKNVAYGELMRVM
CCCCEEEEEECCCEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHH
NLLREAGYLKIALVGLETVGADQPNAAPASPAAGPAIAPEGAAQWMHLRPSTLP
HHHHHCCCEEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCHHEEECCCCCCC
>Mature Secondary Structure 
AGKVREGGGDDLELNHEINVTPFIDVMLVLLIIFMVAAPLATVDVKVDLPASAAAPAPR
CCCCCCCCCCCEEECCEECCCHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCC
PDKPLYVTLKEDLSVSVGNDTVARERLGAALDGLSEKDKETRIFLRADKNVAYGELMRVM
CCCCEEEEEECCCEEECCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHH
NLLREAGYLKIALVGLETVGADQPNAAPASPAAGPAIAPEGAAQWMHLRPSTLP
HHHHHCCCEEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCHHEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8437515 [H]