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The map label for this gene is yagI [H]

Identifier: 225853106

GI number: 225853106

Start: 1610613

End: 1611434

Strand: Reverse

Name: yagI [H]

Synonym: BMEA_A1696

Alternate gene names: 225853106

Gene position: 1611434-1610613 (Counterclockwise)

Preceding gene: 225853110

Following gene: 225853102

Centisome position: 75.81

GC content: 58.64

Gene sequence:

>822_bases
ATGGATGGTGATAAAATTATGATCGACGCGGAGGGTTCCCTGAAACTGGTTCCGGCAGTCATGCGTGCAGCACAGATATT
GGACCAGATCGCGCGTGCGACACAGGAGGGGGGCAAAATGAGCGGCGAGGGGATGAAGCTTTCCGAGCTTGCGCGCCAGA
CCGCCCTGCCGAAAAGCAGTGTGCACGGGCTTTGTCAGACGCTCGTACATCTGAAGCTTTTGAAGCTGAATGGGGACGGC
AGTTTCAGCATGGGGCCGCAATCGGTACGCTGGGCCAATGTCTTTCTGGCGCAAAGCGATATTGTCGAGGCATTCCACGA
GGCTGTGGCGGAGGCGGTAGGGCTTGGTGCTTATACATTGACCCTTTCGCATCTTGAGGGGCCTGAAGTCATCTATCTCT
CCTGCCGCAATTCATCTGCGCCGCTTGGCATTACTTTCCGTATCGGTATGCGCGTCCCGGCAGTGTTTACCGCCACGGGC
AAGGCGATGCTGGCGGCGATGTCTCCCCGTGAACTTACGCAGCATCTTCCGTCCGAATGGCCCGGCCCGGTCACGCCGAC
GAGCGTTTCTTCGTTGGCGGCGCTGGAAAAGGAAATGGGGGAGGCAGTTATAAAAGGGTACTCGCTTGATAATGGCCAGT
TGCGTGAGGGCATGTTCTGCATTGGTGCTGCGATCTGCGATCGCCCATTTCATCCTGTGGCCGGTATTGCCCTATCGATG
ACGGCTGCGGAGGCGCGGCCCGACATCATAGAGGTGATGGGAAAGCGGGTTCGTGCGCTCGCCGACAATGTGGCCGAGCG
CATGGGATGGGCCGCAGCGTGA

Upstream 100 bases:

>100_bases
TCTTGCATGAAGTGAGTGTTCAATATACTGAACACCTTACGATATTCTGAATTAAATAGACCGAGACGGATAAAGTCAAT
CGGTCAATAGGTGGGCTGCC

Downstream 100 bases:

>100_bases
ACCGCTTTCCGTGACGGTGGCTTGAGGGAAGGGGCGTCCGTTTTTCTCGTTTTACGGCGGAATCGGCATGGTCATTTCAC
TTAACAAAGCGTAAAATTAT

Product: regulatory protein IclR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MDGDKIMIDAEGSLKLVPAVMRAAQILDQIARATQEGGKMSGEGMKLSELARQTALPKSSVHGLCQTLVHLKLLKLNGDG
SFSMGPQSVRWANVFLAQSDIVEAFHEAVAEAVGLGAYTLTLSHLEGPEVIYLSCRNSSAPLGITFRIGMRVPAVFTATG
KAMLAAMSPRELTQHLPSEWPGPVTPTSVSSLAALEKEMGEAVIKGYSLDNGQLREGMFCIGAAICDRPFHPVAGIALSM
TAAEARPDIIEVMGKRVRALADNVAERMGWAAA

Sequences:

>Translated_273_residues
MDGDKIMIDAEGSLKLVPAVMRAAQILDQIARATQEGGKMSGEGMKLSELARQTALPKSSVHGLCQTLVHLKLLKLNGDG
SFSMGPQSVRWANVFLAQSDIVEAFHEAVAEAVGLGAYTLTLSHLEGPEVIYLSCRNSSAPLGITFRIGMRVPAVFTATG
KAMLAAMSPRELTQHLPSEWPGPVTPTSVSSLAALEKEMGEAVIKGYSLDNGQLREGMFCIGAAICDRPFHPVAGIALSM
TAAEARPDIIEVMGKRVRALADNVAERMGWAAA
>Mature_273_residues
MDGDKIMIDAEGSLKLVPAVMRAAQILDQIARATQEGGKMSGEGMKLSELARQTALPKSSVHGLCQTLVHLKLLKLNGDG
SFSMGPQSVRWANVFLAQSDIVEAFHEAVAEAVGLGAYTLTLSHLEGPEVIYLSCRNSSAPLGITFRIGMRVPAVFTATG
KAMLAAMSPRELTQHLPSEWPGPVTPTSVSSLAALEKEMGEAVIKGYSLDNGQLREGMFCIGAAICDRPFHPVAGIALSM
TAAEARPDIIEVMGKRVRALADNVAERMGWAAA

Specific function: Unknown

COG id: COG1414

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 iclR-ED (iclR effector binding) domain [H]

Homologues:

Organism=Escherichia coli, GI1786468, Length=242, Percent_Identity=25.2066115702479, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI1788131, Length=225, Percent_Identity=24, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI87082359, Length=251, Percent_Identity=23.5059760956175, Blast_Score=68, Evalue=8e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014757
- InterPro:   IPR005471
- InterPro:   IPR011991 [H]

Pfam domain/function: PF09339 HTH_IclR; PF01614 IclR [H]

EC number: NA

Molecular weight: Translated: 28971; Mature: 28971

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS51077 HTH_ICLR ; PS51078 ICLR_ED

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGDKIMIDAEGSLKLVPAVMRAAQILDQIARATQEGGKMSGEGMKLSELARQTALPKSS
CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHH
VHGLCQTLVHLKLLKLNGDGSFSMGPQSVRWANVFLAQSDIVEAFHEAVAEAVGLGAYTL
HHHHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEE
TLSHLEGPEVIYLSCRNSSAPLGITFRIGMRVPAVFTATGKAMLAAMSPRELTQHLPSEW
EEECCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEECCHHHHHHCCHHHHHHHCCCCC
PGPVTPTSVSSLAALEKEMGEAVIKGYSLDNGQLREGMFCIGAAICDRPFHPVAGIALSM
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHCCCCCCHHHHHHEE
TAAEARPDIIEVMGKRVRALADNVAERMGWAAA
HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MDGDKIMIDAEGSLKLVPAVMRAAQILDQIARATQEGGKMSGEGMKLSELARQTALPKSS
CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHH
VHGLCQTLVHLKLLKLNGDGSFSMGPQSVRWANVFLAQSDIVEAFHEAVAEAVGLGAYTL
HHHHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHEE
TLSHLEGPEVIYLSCRNSSAPLGITFRIGMRVPAVFTATGKAMLAAMSPRELTQHLPSEW
EEECCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEECCHHHHHHCCHHHHHHHCCCCC
PGPVTPTSVSSLAALEKEMGEAVIKGYSLDNGQLREGMFCIGAAICDRPFHPVAGIALSM
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCHHHHHHHHHCCCCCCHHHHHHEE
TAAEARPDIIEVMGKRVRALADNVAERMGWAAA
HHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]