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The map label for this gene is lgtE [H]

Identifier: 225853077

GI number: 225853077

Start: 1568671

End: 1569453

Strand: Reverse

Name: lgtE [H]

Synonym: BMEA_A1657

Alternate gene names: 225853077

Gene position: 1569453-1568671 (Counterclockwise)

Preceding gene: 225853079

Following gene: 225853075

Centisome position: 73.83

GC content: 50.45

Gene sequence:

>783_bases
ATGAAGTGTTATCTTATTAATCTCGACAAGAGCCGGGATCGCCTCGAATTCATGGCGTCTCAGTTTGAGCGCCTCGGCGC
ACAATTCGAGCGTGTGGAAGCCGTAAATGGACGAGCCATGTCGCCGCTTGAACTGGCTTCCTTTACTCAAATAAGTAAAG
AATGGCCCGCTCCTTTGTCGCCTGCCGAAATTGGCTGTTTTCTTTCTCATCGCAAATGCCTTGAAAAGATTGCTGCCGGC
GAAGATGCCTATGCGGCAGTCTTTGAAGATGACATTCGATTGAGCCAGGGTTCCTCGCGGTTTTTGGCTTCAGATCACTG
GATACCCAAGCAAGCGGATATCGTCAAAATCGACGCTTACGGACATGAGGTATTGATTTCCAACCCTGTTAAAAATGAAG
GCCCGTATTCGATTTCCCGGCTGCGCTCGCGACACTTGCAGACGGGCGGATACGTTGTTTCGCGCGAAGCAGCTCGCAAG
CTCCTTCCATTGATGGAAAAAGTCTCAGCGCCGGTAGACCATTTCTTGTTCGATCCCAATGATGGGCCATTCAACGATTT
TGAAATTTATCAGATTTCCCCTGCAATTTGCCGCCAGTCGGGAATGGAAAGCACAATCGGTCAGAATCGGCGCCCCAAAC
AGCGCCCCTCTCTTTTGGGCTTGGTCTGGCGTGAAGCTAAAAGATTGGTTATGCGAACCCGTCGCAATCTAAAAGGTTTC
ATAGCCAACGTCACCAAAACAGGCCGGTGGGGGCCCATTCCATTTGATCGGGATATTGCGTAG

Upstream 100 bases:

>100_bases
GGCCCAGGCGATGGCAAAGCGCGCACACTTTATACTGCTGCCATTAAGTGACTAGAATTCAAAGGCCTCCTAATGAATGA
CCATTCCAAGGGGGGGCTTT

Downstream 100 bases:

>100_bases
TTCACCCGCAATTAGTCATAGCCAATTTTAACAATAGATGTTGACCCTGGCGAAGGCGCATCTTCTGCGTAATATGCTAT
CAATCTTCTGAACAGATTAG

Product: lacto-N-neotetraose biosynthesis glycosyltransferase lgtE

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MKCYLINLDKSRDRLEFMASQFERLGAQFERVEAVNGRAMSPLELASFTQISKEWPAPLSPAEIGCFLSHRKCLEKIAAG
EDAYAAVFEDDIRLSQGSSRFLASDHWIPKQADIVKIDAYGHEVLISNPVKNEGPYSISRLRSRHLQTGGYVVSREAARK
LLPLMEKVSAPVDHFLFDPNDGPFNDFEIYQISPAICRQSGMESTIGQNRRPKQRPSLLGLVWREAKRLVMRTRRNLKGF
IANVTKTGRWGPIPFDRDIA

Sequences:

>Translated_260_residues
MKCYLINLDKSRDRLEFMASQFERLGAQFERVEAVNGRAMSPLELASFTQISKEWPAPLSPAEIGCFLSHRKCLEKIAAG
EDAYAAVFEDDIRLSQGSSRFLASDHWIPKQADIVKIDAYGHEVLISNPVKNEGPYSISRLRSRHLQTGGYVVSREAARK
LLPLMEKVSAPVDHFLFDPNDGPFNDFEIYQISPAICRQSGMESTIGQNRRPKQRPSLLGLVWREAKRLVMRTRRNLKGF
IANVTKTGRWGPIPFDRDIA
>Mature_260_residues
MKCYLINLDKSRDRLEFMASQFERLGAQFERVEAVNGRAMSPLELASFTQISKEWPAPLSPAEIGCFLSHRKCLEKIAAG
EDAYAAVFEDDIRLSQGSSRFLASDHWIPKQADIVKIDAYGHEVLISNPVKNEGPYSISRLRSRHLQTGGYVVSREAARK
LLPLMEKVSAPVDHFLFDPNDGPFNDFEIYQISPAICRQSGMESTIGQNRRPKQRPSLLGLVWREAKRLVMRTRRNLKGF
IANVTKTGRWGPIPFDRDIA

Specific function: Adds the first galactose to the lacto-N-tetraose chain in lipooligosaccharide (LOS) [H]

COG id: COG3306

COG function: function code M; Glycosyltransferase involved in LPS biosynthesis

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 25 family [H]

Homologues:

Organism=Caenorhabditis elegans, GI71983853, Length=201, Percent_Identity=31.8407960199005, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002654 [H]

Pfam domain/function: PF01755 Glyco_transf_25 [H]

EC number: NA

Molecular weight: Translated: 29479; Mature: 29479

Theoretical pI: Translated: 9.62; Mature: 9.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKCYLINLDKSRDRLEFMASQFERLGAQFERVEAVNGRAMSPLELASFTQISKEWPAPLS
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC
PAEIGCFLSHRKCLEKIAAGEDAYAAVFEDDIRLSQGSSRFLASDHWIPKQADIVKIDAY
HHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCHHCCCCCCCCEECCCCCCCCCCEEEEECC
GHEVLISNPVKNEGPYSISRLRSRHLQTGGYVVSREAARKLLPLMEKVSAPVDHFLFDPN
CCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCHHHEEECCC
DGPFNDFEIYQISPAICRQSGMESTIGQNRRPKQRPSLLGLVWREAKRLVMRTRRNLKGF
CCCCCCEEEEEECHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IANVTKTGRWGPIPFDRDIA
HHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKCYLINLDKSRDRLEFMASQFERLGAQFERVEAVNGRAMSPLELASFTQISKEWPAPLS
CEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCC
PAEIGCFLSHRKCLEKIAAGEDAYAAVFEDDIRLSQGSSRFLASDHWIPKQADIVKIDAY
HHHHHHHHHHHHHHHHHHCCCCCEEHHHHHCHHCCCCCCCCEECCCCCCCCCCEEEEECC
GHEVLISNPVKNEGPYSISRLRSRHLQTGGYVVSREAARKLLPLMEKVSAPVDHFLFDPN
CCEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHCCCHHHEEECCC
DGPFNDFEIYQISPAICRQSGMESTIGQNRRPKQRPSLLGLVWREAKRLVMRTRRNLKGF
CCCCCCEEEEEECHHHHHHCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
IANVTKTGRWGPIPFDRDIA
HHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7964493 [H]