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The map label for this gene is ompW [C]

Identifier: 225853040

GI number: 225853040

Start: 1533762

End: 1534445

Strand: Direct

Name: ompW [C]

Synonym: BMEA_A1617

Alternate gene names: 225853040

Gene position: 1533762-1534445 (Clockwise)

Preceding gene: 225853039

Following gene: 225853042

Centisome position: 72.15

GC content: 56.29

Gene sequence:

>684_bases
ATGAACCGCTTCACCAAGAGCCTCTTGGCAGCCACCGCGCTCGCCCTCACCGCGCCAGCCGCATTTGCCGCCGATGCAAT
CGTCGCCCAGCCCGCCACCGAAATTCAGGCTGTGCCGGAAGCCCTGTCGCCATGGCAGATCCGCGTCCGCGCACTTGGCG
TCATTGCCGAAAATTCCGGCTATGTGGACGGCGTTGCGGGTTCCGATCTCAATTATTCCAAGTCGATCACTCCTGAACTC
GATATCACCTATTACTTCACGAAGAACATCGCCGCCGAACTTATCCTCGGCACGACCTATGCCAATATCAATGGCGCGGG
TTCGCTGGATGGTTTCGGCAAGATCGGCAAGGTCTGGATTCTGCCGCCCACGCTCACGCTGCAATATCACTTCACCAATT
TCGGCGCTTTCAAACCCTATGTCGGTGCCGGTGTGAACTACACCTTCTTCTATAATCAGGATGCGGGAAGCGTCGATTAT
CTGAAGGTCAAGAATACTTTTGGCGGCGCGCTCCAGATCGGCTTCGACTACATGCTCAATGAACATTGGGGCGTGAACTT
CGACGTGAAGAAGCTCTTCCTCGAACCGAAGTTCGATGCCACTCTGGCTGGCGGCGCGGAAGTCAGCGGCAAGGCCAAGC
TTAATCCGTGGCTGATCGGCACCGGTATTACCTACCGTTTCTGA

Upstream 100 bases:

>100_bases
CTCGTCTGATGGCGCCTCTTTGATTTGGATCAATGGGATGCCGCGCGACGCAGCCCAGATTGGGCACGCTACTACCCAGG
ACTTACAGGAGAGAGAAAAG

Downstream 100 bases:

>100_bases
CAAGCACCGATCCGGTGAAGGCGCAGCGCGCCTTCACCAAAATGGAAGCGGCTCCAGATCATGAAGCACTTCCTGCAAGC
GCCGCTTGGTGGATGCTGTC

Product: outer membrane protein alkL precursor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MNRFTKSLLAATALALTAPAAFAADAIVAQPATEIQAVPEALSPWQIRVRALGVIAENSGYVDGVAGSDLNYSKSITPEL
DITYYFTKNIAAELILGTTYANINGAGSLDGFGKIGKVWILPPTLTLQYHFTNFGAFKPYVGAGVNYTFFYNQDAGSVDY
LKVKNTFGGALQIGFDYMLNEHWGVNFDVKKLFLEPKFDATLAGGAEVSGKAKLNPWLIGTGITYRF

Sequences:

>Translated_227_residues
MNRFTKSLLAATALALTAPAAFAADAIVAQPATEIQAVPEALSPWQIRVRALGVIAENSGYVDGVAGSDLNYSKSITPEL
DITYYFTKNIAAELILGTTYANINGAGSLDGFGKIGKVWILPPTLTLQYHFTNFGAFKPYVGAGVNYTFFYNQDAGSVDY
LKVKNTFGGALQIGFDYMLNEHWGVNFDVKKLFLEPKFDATLAGGAEVSGKAKLNPWLIGTGITYRF
>Mature_227_residues
MNRFTKSLLAATALALTAPAAFAADAIVAQPATEIQAVPEALSPWQIRVRALGVIAENSGYVDGVAGSDLNYSKSITPEL
DITYYFTKNIAAELILGTTYANINGAGSLDGFGKIGKVWILPPTLTLQYHFTNFGAFKPYVGAGVNYTFFYNQDAGSVDY
LKVKNTFGGALQIGFDYMLNEHWGVNFDVKKLFLEPKFDATLAGGAEVSGKAKLNPWLIGTGITYRF

Specific function: Acts As A Receptor For Colicin S4. [C]

COG id: COG3047

COG function: function code M; Outer membrane protein W

Gene ontology:

Cell location: Cell outer membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the OmpW/AlkL family [H]

Homologues:

Organism=Escherichia coli, GI1787510, Length=156, Percent_Identity=36.5384615384615, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR005618 [H]

Pfam domain/function: PF03922 OmpW [H]

EC number: NA

Molecular weight: Translated: 24501; Mature: 24501

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
0.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
0.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRFTKSLLAATALALTAPAAFAADAIVAQPATEIQAVPEALSPWQIRVRALGVIAENSG
CCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEEEEEEEECCCC
YVDGVAGSDLNYSKSITPELDITYYFTKNIAAELILGTTYANINGAGSLDGFGKIGKVWI
EEECCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEE
LPPTLTLQYHFTNFGAFKPYVGAGVNYTFFYNQDAGSVDYLKVKNTFGGALQIGFDYMLN
ECCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEEEEC
EHWGVNFDVKKLFLEPKFDATLAGGAEVSGKAKLNPWLIGTGITYRF
CCCCCCEEEEEEEECCCCCEEECCCCCCCCCEECCCEEEECCEEEEC
>Mature Secondary Structure
MNRFTKSLLAATALALTAPAAFAADAIVAQPATEIQAVPEALSPWQIRVRALGVIAENSG
CCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEEEEEEEECCCC
YVDGVAGSDLNYSKSITPELDITYYFTKNIAAELILGTTYANINGAGSLDGFGKIGKVWI
EEECCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEEEEEEECCCCCCCCCCCCCCCEEEE
LPPTLTLQYHFTNFGAFKPYVGAGVNYTFFYNQDAGSVDYLKVKNTFGGALQIGFDYMLN
ECCEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCEEEEEEEEEEC
EHWGVNFDVKKLFLEPKFDATLAGGAEVSGKAKLNPWLIGTGITYRF
CCCCCCEEEEEEEECCCCCEEECCCCCCCCCEECCCEEEECCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]