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The map label for this gene is petR [H]

Identifier: 225852998

GI number: 225852998

Start: 1492726

End: 1493451

Strand: Direct

Name: petR [H]

Synonym: BMEA_A1573

Alternate gene names: 225852998

Gene position: 1492726-1493451 (Clockwise)

Preceding gene: 225852997

Following gene: 225852999

Centisome position: 70.22

GC content: 59.09

Gene sequence:

>726_bases
ATGGGATCGAAAGACGCCATGGCTGCAGAAGAAGAAAAGACGCTATCGGACGACGCACCGCACCTTCTCGTCGTGGACGA
CGATACGCGCATCCGCAGCCTTCTCTCACAATATTTGACCAATAGCGGGTTTCGCGTCACGATGGCTGGCAGTGCAGCCG
AAGCGCGCCGCAAGCTGGAAGGCATCGACTTCGACCTTCTGATTCTCGACGTGATGATGCCGGGAGAAACCGGCGTTTCG
CTGACGCGCTCCTTGCGCGAACAGAAGAACGTGCCGATTCTCATGCTGACAGCCCTGTCGGAAACCGACAGCCGCATCGA
CGGCCTGGCTGCCGGAGCAGACGACTATCTGCCCAAACCCTTTGATCCGCGCGAACTGACACTGCGTATCAACAATATCC
TGCGCCGTGGCGCACCGCCCGCGCAGCCGAAGATCGAACAGATCGTGTTCGGCCCTTATACTTTTTTCATTCCGCGTCGC
GAATTGAAGAAGGGAACCGAGACGATCAAGCTCACCGACCGCGAGCAGGATATCATGGCGATCTTTGCCGAGCGGGCGGG
CGAAACCATCCCCCGCCATGAACTGACCGGGCAGGACGGCGATGTGGGTGAACGCACGATCGATGTGCAGATCAACCGTC
TGCGCCGAAAGATCGAGCAGGATCCCGCAAACCCGGTCTGGCTCCAGACCGTGCGCGGCATCGGCTACAAACTCAGCATC
GAATAG

Upstream 100 bases:

>100_bases
GCATCCATGCAGGCAGTGAATAGACGTGCCGCATTCCAGTCGATAAGATGCACACCAAAGCACCAGCCATAATCTGGGAT
GCTGAAGCAAAATTATCGGA

Downstream 100 bases:

>100_bases
CAAGGCAACGGCAATCGGGAATAGCGCGATCAGAAAATGGTGTTTTTTCAAAACGCAGGGCGACGTGTACAAAAGGTACA
ACCGCAATGTGGTTCATGGA

Product: protein PetR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MGSKDAMAAEEEKTLSDDAPHLLVVDDDTRIRSLLSQYLTNSGFRVTMAGSAAEARRKLEGIDFDLLILDVMMPGETGVS
LTRSLREQKNVPILMLTALSETDSRIDGLAAGADDYLPKPFDPRELTLRINNILRRGAPPAQPKIEQIVFGPYTFFIPRR
ELKKGTETIKLTDREQDIMAIFAERAGETIPRHELTGQDGDVGERTIDVQINRLRRKIEQDPANPVWLQTVRGIGYKLSI
E

Sequences:

>Translated_241_residues
MGSKDAMAAEEEKTLSDDAPHLLVVDDDTRIRSLLSQYLTNSGFRVTMAGSAAEARRKLEGIDFDLLILDVMMPGETGVS
LTRSLREQKNVPILMLTALSETDSRIDGLAAGADDYLPKPFDPRELTLRINNILRRGAPPAQPKIEQIVFGPYTFFIPRR
ELKKGTETIKLTDREQDIMAIFAERAGETIPRHELTGQDGDVGERTIDVQINRLRRKIEQDPANPVWLQTVRGIGYKLSI
E
>Mature_240_residues
GSKDAMAAEEEKTLSDDAPHLLVVDDDTRIRSLLSQYLTNSGFRVTMAGSAAEARRKLEGIDFDLLILDVMMPGETGVSL
TRSLREQKNVPILMLTALSETDSRIDGLAAGADDYLPKPFDPRELTLRINNILRRGAPPAQPKIEQIVFGPYTFFIPRRE
LKKGTETIKLTDREQDIMAIFAERAGETIPRHELTGQDGDVGERTIDVQINRLRRKIEQDPANPVWLQTVRGIGYKLSIE

Specific function: Necessary for photosynthetic and respiratory growth. Probable promoter-specific protein mediating the interaction between DNA and RNA polymerase [H]

COG id: COG0745

COG function: function code TK; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1789809, Length=224, Percent_Identity=45.0892857142857, Blast_Score=178, Evalue=2e-46,
Organism=Escherichia coli, GI1786784, Length=227, Percent_Identity=37.0044052863436, Blast_Score=132, Evalue=2e-32,
Organism=Escherichia coli, GI1790863, Length=231, Percent_Identity=35.4978354978355, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI1787229, Length=230, Percent_Identity=35.6521739130435, Blast_Score=127, Evalue=8e-31,
Organism=Escherichia coli, GI1788394, Length=230, Percent_Identity=31.304347826087, Blast_Score=117, Evalue=5e-28,
Organism=Escherichia coli, GI1786599, Length=229, Percent_Identity=32.7510917030568, Blast_Score=115, Evalue=3e-27,
Organism=Escherichia coli, GI2367329, Length=229, Percent_Identity=35.8078602620087, Blast_Score=114, Evalue=4e-27,
Organism=Escherichia coli, GI87082012, Length=222, Percent_Identity=32.4324324324324, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI1786911, Length=224, Percent_Identity=32.5892857142857, Blast_Score=111, Evalue=5e-26,
Organism=Escherichia coli, GI1787375, Length=220, Percent_Identity=35.9090909090909, Blast_Score=108, Evalue=2e-25,
Organism=Escherichia coli, GI1790552, Length=222, Percent_Identity=31.0810810810811, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1789402, Length=223, Percent_Identity=29.1479820627803, Blast_Score=91, Evalue=5e-20,
Organism=Escherichia coli, GI145693140, Length=228, Percent_Identity=29.3859649122807, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790860, Length=222, Percent_Identity=31.0810810810811, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790299, Length=137, Percent_Identity=32.8467153284672, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788550, Length=115, Percent_Identity=30.4347826086957, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1790437, Length=109, Percent_Identity=32.1100917431193, Blast_Score=65, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR001867
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00072 Response_reg; PF00486 Trans_reg_C [H]

EC number: NA

Molecular weight: Translated: 26987; Mature: 26856

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGSKDAMAAEEEKTLSDDAPHLLVVDDDTRIRSLLSQYLTNSGFRVTMAGSAAEARRKLE
CCCCCCCCCHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHC
GIDFDLLILDVMMPGETGVSLTRSLREQKNVPILMLTALSETDSRIDGLAAGADDYLPKP
CCCEEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCC
FDPRELTLRINNILRRGAPPAQPKIEQIVFGPYTFFIPRRELKKGTETIKLTDREQDIMA
CCCHHEEHHHHHHHHCCCCCCCCCHHEEEECCEEEEEEHHHHHCCCCEEEEECCHHHHHH
IFAERAGETIPRHELTGQDGDVGERTIDVQINRLRRKIEQDPANPVWLQTVRGIGYKLSI
HHHHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEE
E
C
>Mature Secondary Structure 
GSKDAMAAEEEKTLSDDAPHLLVVDDDTRIRSLLSQYLTNSGFRVTMAGSAAEARRKLE
CCCCCCCCHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHC
GIDFDLLILDVMMPGETGVSLTRSLREQKNVPILMLTALSETDSRIDGLAAGADDYLPKP
CCCEEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHCCCCCCCCCC
FDPRELTLRINNILRRGAPPAQPKIEQIVFGPYTFFIPRRELKKGTETIKLTDREQDIMA
CCCHHEEHHHHHHHHCCCCCCCCCHHEEEECCEEEEEEHHHHHCCCCEEEEECCHHHHHH
IFAERAGETIPRHELTGQDGDVGERTIDVQINRLRRKIEQDPANPVWLQTVRGIGYKLSI
HHHHHHCCCCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHCCCCCHHHHHHHCCCEEEEE
E
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1323023 [H]