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The map label for this gene is recD [C]

Identifier: 225852870

GI number: 225852870

Start: 1361383

End: 1362549

Strand: Reverse

Name: recD [C]

Synonym: BMEA_A1434

Alternate gene names: 225852870

Gene position: 1362549-1361383 (Counterclockwise)

Preceding gene: 225852871

Following gene: 225852868

Centisome position: 64.1

GC content: 57.75

Gene sequence:

>1167_bases
TTGTTTGATCTTGTTTTCAGACGGCGAATCCTGTCTGAAAGGATCATGCAGTTTTCACCCGAACAGGATCAGGCGCTGAA
AGCAGTCGGCCAATGGCTCAAGGCCGGGCGCAGCCCCATCTTCAGGCTCTTTGGCTATGCCGGCACGGGCAAGACGACGC
TTGCGCGCTATTTTGCCGAGCATGTGGATGGTGAGGTGCAGTTTGCAGCCTTCACCGGCAAGGCGGCGCAGGTTCTCCGT
TCCAAGGGCGCCAGCAATGCCCGCACGCTTCATTCCCTGATTTATCGCCCGCGCGGTGAAGAGGCGATTGAGGACGAGAC
GACAGGCAAGACATCCATTGCGCCAACCTTTTCGCTCAACCGGCAAAGCCCGGTTGCGAAAGCCGCCATGATCGTGGTCG
ATGAATGTTCGATGGTGGATGAGGCGCTGGGACGGGACCTGATGAGTTTCGGCACGCCAATTCTCGTTCTGGGGGATCCG
GGCCAATTGCCGCCGATTTCCGGCGGCGGGTTCTTCACCGAGCATGAGCCGGATTATCTCCTGACCGAAATTCATCGTCA
GGCACGCGACAATCCAATCATCCGCATGGCGCTGGATGTGCGCGAAGGCCGGGAACTGTCCTATGGCGATTATGGCGCGG
CAAAGGTGATCGGCAAAAGCGAGGTCAATCAGGATATCGTTCTGGCCGCAGATCAGGTGCTTGTGGGCACCAACCGCACC
AGGCGGCGCTATAACCAGCGCCTGCGGGAGCTGAAAGGTTTTACGGCCGATTATCCGCAGGTGGGTGACAAGCTCGTCTG
CCTGCGCAACGATCCGACCAAGGGGCTGCTCAACGGCTCGCTCTGGAAGGTGATGACTTCTTCCAAGGAAACCGTGAAGC
CCGGCATCAATCTTCTGGTCTCGCCGGAGGATGAGGATCGCGGCGTTGCCAAGATCAAGCTTCTCAAGGCGCAGTTCGAG
GACCCGGACACCGAAATTCCGTGGCAGACCAAGAAACGTTTTGATGATTTTGATTATGGCTATGCGCTGACCGTCCATAA
GGCGCAGGGTTCGCAATGGGATCAGGTCGTTCTGTTCGACGAAAGCTTCGCCTTTCGCGATACGCGTGAACGCTGGCTCT
ATACGGCCATTACGCGCGCGGCAGAACGCCTCATCATCGTGAAGTAA

Upstream 100 bases:

>100_bases
TCATGCCTTGCCGCAAATGGCGCCGACGCCCAAAGGGTCGGCGCCATTATCAGCGGAGGCAATGTCGCTCTCGGCAGATT
GGCCGTTTCGATAAGCAAAA

Downstream 100 bases:

>100_bases
TCATTCTTCGACCGGCTTTGCATCAAGCCATTCCCAGGCATCCTGTTCTTCGTCGGGATCGAAGGCGCGAACTTCTATGG
AGAGGAATGGCTGCACGAGG

Product: hypothetical protein

Products: NA

Alternate protein names: Deoxyribonuclease; ATPase; Helicase RecD/TraA Family; Helicase RecD/TraA; Exonuclease V Subunit Alpha; Exodeoxyribonuclease V Alpha Chain; AAA Family ATPase; Exodeoxyribonuclease V Subunit Alpha; Exodeoxyribosylnuclease; Exodeoxyribonuclease V Subunit RecD; Bacteriophage-Type DNA Helicase; ATP-Dependent ExoDNAse Subunit Alpha; Exodeoxyribonuclease; AAA ATPase; Helicase; Helicase ATP-Dependent; ATP-Dependent ExoDNAse; DNA Helicase

Number of amino acids: Translated: 388; Mature: 388

Protein sequence:

>388_residues
MFDLVFRRRILSERIMQFSPEQDQALKAVGQWLKAGRSPIFRLFGYAGTGKTTLARYFAEHVDGEVQFAAFTGKAAQVLR
SKGASNARTLHSLIYRPRGEEAIEDETTGKTSIAPTFSLNRQSPVAKAAMIVVDECSMVDEALGRDLMSFGTPILVLGDP
GQLPPISGGGFFTEHEPDYLLTEIHRQARDNPIIRMALDVREGRELSYGDYGAAKVIGKSEVNQDIVLAADQVLVGTNRT
RRRYNQRLRELKGFTADYPQVGDKLVCLRNDPTKGLLNGSLWKVMTSSKETVKPGINLLVSPEDEDRGVAKIKLLKAQFE
DPDTEIPWQTKKRFDDFDYGYALTVHKAQGSQWDQVVLFDESFAFRDTRERWLYTAITRAAERLIIVK

Sequences:

>Translated_388_residues
MFDLVFRRRILSERIMQFSPEQDQALKAVGQWLKAGRSPIFRLFGYAGTGKTTLARYFAEHVDGEVQFAAFTGKAAQVLR
SKGASNARTLHSLIYRPRGEEAIEDETTGKTSIAPTFSLNRQSPVAKAAMIVVDECSMVDEALGRDLMSFGTPILVLGDP
GQLPPISGGGFFTEHEPDYLLTEIHRQARDNPIIRMALDVREGRELSYGDYGAAKVIGKSEVNQDIVLAADQVLVGTNRT
RRRYNQRLRELKGFTADYPQVGDKLVCLRNDPTKGLLNGSLWKVMTSSKETVKPGINLLVSPEDEDRGVAKIKLLKAQFE
DPDTEIPWQTKKRFDDFDYGYALTVHKAQGSQWDQVVLFDESFAFRDTRERWLYTAITRAAERLIIVK
>Mature_388_residues
MFDLVFRRRILSERIMQFSPEQDQALKAVGQWLKAGRSPIFRLFGYAGTGKTTLARYFAEHVDGEVQFAAFTGKAAQVLR
SKGASNARTLHSLIYRPRGEEAIEDETTGKTSIAPTFSLNRQSPVAKAAMIVVDECSMVDEALGRDLMSFGTPILVLGDP
GQLPPISGGGFFTEHEPDYLLTEIHRQARDNPIIRMALDVREGRELSYGDYGAAKVIGKSEVNQDIVLAADQVLVGTNRT
RRRYNQRLRELKGFTADYPQVGDKLVCLRNDPTKGLLNGSLWKVMTSSKETVKPGINLLVSPEDEDRGVAKIKLLKAQFE
DPDTEIPWQTKKRFDDFDYGYALTVHKAQGSQWDQVVLFDESFAFRDTRERWLYTAITRAAERLIIVK

Specific function: Exhibits Several Catalytic Activities, Including ATP-Dependent Exonuclease, ATP-Stimulated Endonuclease, ATP-Dependent Unwinding And DNA-Dependent ATPase Activities. Strand Cleavage Occurs 5' To 3' During The Unwinding Of Duplex DNA At Chi Sequences, Whi

COG id: COG0507

COG function: function code L; ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.1.11.5

Molecular weight: Translated: 43628; Mature: 43628

Theoretical pI: Translated: 8.58; Mature: 8.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDLVFRRRILSERIMQFSPEQDQALKAVGQWLKAGRSPIFRLFGYAGTGKTTLARYFAE
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHH
HVDGEVQFAAFTGKAAQVLRSKGASNARTLHSLIYRPRGEEAIEDETTGKTSIAPTFSLN
HCCCCEEEEEECCHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCEEECC
RQSPVAKAAMIVVDECSMVDEALGRDLMSFGTPILVLGDPGQLPPISGGGFFTEHEPDYL
CCCCHHHHHEEEEHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCHH
LTEIHRQARDNPIIRMALDVREGRELSYGDYGAAKVIGKSEVNQDIVLAADQVLVGTNRT
HHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHEECHHHCCCCEEEEECEEEECCCHH
RRRYNQRLRELKGFTADYPQVGDKLVCLRNDPTKGLLNGSLWKVMTSSKETVKPGINLLV
HHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCHHHCCCCEEEE
SPEDEDRGVAKIKLLKAQFEDPDTEIPWQTKKRFDDFDYGYALTVHKAQGSQWDQVVLFD
CCCCCCCCCEEEEEEEHHCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCCCCEEEEEE
ESFAFRDTRERWLYTAITRAAERLIIVK
CCCCHHHHHHHHHHHHHHHHHHEEEEEC
>Mature Secondary Structure
MFDLVFRRRILSERIMQFSPEQDQALKAVGQWLKAGRSPIFRLFGYAGTGKTTLARYFAE
CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHH
HVDGEVQFAAFTGKAAQVLRSKGASNARTLHSLIYRPRGEEAIEDETTGKTSIAPTFSLN
HCCCCEEEEEECCHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHCCCCCCCCCCCCEEECC
RQSPVAKAAMIVVDECSMVDEALGRDLMSFGTPILVLGDPGQLPPISGGGFFTEHEPDYL
CCCCHHHHHEEEEHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCHH
LTEIHRQARDNPIIRMALDVREGRELSYGDYGAAKVIGKSEVNQDIVLAADQVLVGTNRT
HHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHEECHHHCCCCEEEEECEEEECCCHH
RRRYNQRLRELKGFTADYPQVGDKLVCLRNDPTKGLLNGSLWKVMTSSKETVKPGINLLV
HHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHCCCHHHCCCCEEEE
SPEDEDRGVAKIKLLKAQFEDPDTEIPWQTKKRFDDFDYGYALTVHKAQGSQWDQVVLFD
CCCCCCCCCEEEEEEEHHCCCCCCCCCCCHHHCCCCCCCCEEEEEEECCCCCCCEEEEEE
ESFAFRDTRERWLYTAITRAAERLIIVK
CCCCHHHHHHHHHHHHHHHHHHEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: DNA-dependent ATPase activity; Phosphoric ester hydrolysis [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA