Click here to switch to the map view.

The map label for this gene is dgdR [H]

Identifier: 225852807

GI number: 225852807

Start: 1295597

End: 1296547

Strand: Reverse

Name: dgdR [H]

Synonym: BMEA_A1364

Alternate gene names: 225852807

Gene position: 1296547-1295597 (Counterclockwise)

Preceding gene: 225852809

Following gene: 225852806

Centisome position: 60.99

GC content: 58.57

Gene sequence:

>951_bases
TTGAACCATGCCCAAGATGCGGAATCCGATATGACAGCGCCCGTTCAACATCCTTTGCCGATGCTCGATATTGATGTGCT
GCGCACTTTCGTCGCGATTGCCGATACGGGCAGTTTTTCTTCAGCGGCGAATGCCGTGTTCCGCACGCCTTCGGCTGTGT
CCATGCAGATCAAGAAGCTGGAAGAACAGTTGGGTGTCGCAGTGTTCGACCGCGATGCGCGTTCCGTGACATTGACCGGC
GACGGGGAAATCCTGCTCGGTTATGCGCGGCGTCTTCTGGCGCTCAATCGCGAAGCCGTATCGAAATTCGTCGCCCCAAC
GGTCACCGGGATCGTGCGGCTTGGCTCGCCTGACGATATTGGTGAATGCGTCCTGCCGCTGGTGTTGAAGCGTTTTGCCG
AAACGCATCCGGGCGTTACCGTCGATGTGGTGATCGACCAGAGCAGCAACCTGCGCAAGCGGCTGGATGAACGCAGGCTC
GATGTCACGCTGGTCAATATTTCCCAGGCTGTGCCAACTAGGGATGATGTGGAAATCATGCTTGATGAAGAGCTCGTCTG
GGCAGGGGCAAAATGCGGCACGGCCTATCGCCGCGATCCTCTGCCGCTTTCGATCTGGGAAGAGGGGTGTGCATGGCGCG
CTAATGCGCTACAGGCGCTGGAAAAGAGCGGGCGGCCTTACCGCGTCGCCTATATGAGTTCGCATTCAACCGGACAGCGC
GCCGCTATCCTGGCCGATCTTGCCATTGCCCCTTTCAGCAAGACGCTTTTGGGGGAGGGTATCGTCGCTCTGGGGCCTGA
GCAGGGCTTGCCTCCGCTTGGCCGCTATCAGCTCGGCATGGTTATCAAGCAAGAAGCCGGGCCTCATATTCAGGTGGTGG
CAGATCACCTGCGCAATGTGTTTGAAACCTATCGCCGCACGGGCCGCTTTGAAACGTTCCGCTCCTGCTGA

Upstream 100 bases:

>100_bases
GGCCGGAAAAACCCGCGAGCCGGTTGTTAGTGTGGTTTCAATGGGAGCGGCGCTTGACGTTCAATTAAACGAAATATAGA
AACTATCAAGGTCAGAAAAT

Downstream 100 bases:

>100_bases
TTAAATCCATATTGCCCGCAAAAAATACTACGCTAAATATTTGGATAAGCCGAAGGATTCGGCTTCCACTGCTTTTGGCC
AAAATATCCTTTGGCAAAAT

Product: HTH-type transcriptional regulator PecT

Products: NA

Alternate protein names: 2,2-dialkylglycine decarboxylase repressor [H]

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MNHAQDAESDMTAPVQHPLPMLDIDVLRTFVAIADTGSFSSAANAVFRTPSAVSMQIKKLEEQLGVAVFDRDARSVTLTG
DGEILLGYARRLLALNREAVSKFVAPTVTGIVRLGSPDDIGECVLPLVLKRFAETHPGVTVDVVIDQSSNLRKRLDERRL
DVTLVNISQAVPTRDDVEIMLDEELVWAGAKCGTAYRRDPLPLSIWEEGCAWRANALQALEKSGRPYRVAYMSSHSTGQR
AAILADLAIAPFSKTLLGEGIVALGPEQGLPPLGRYQLGMVIKQEAGPHIQVVADHLRNVFETYRRTGRFETFRSC

Sequences:

>Translated_316_residues
MNHAQDAESDMTAPVQHPLPMLDIDVLRTFVAIADTGSFSSAANAVFRTPSAVSMQIKKLEEQLGVAVFDRDARSVTLTG
DGEILLGYARRLLALNREAVSKFVAPTVTGIVRLGSPDDIGECVLPLVLKRFAETHPGVTVDVVIDQSSNLRKRLDERRL
DVTLVNISQAVPTRDDVEIMLDEELVWAGAKCGTAYRRDPLPLSIWEEGCAWRANALQALEKSGRPYRVAYMSSHSTGQR
AAILADLAIAPFSKTLLGEGIVALGPEQGLPPLGRYQLGMVIKQEAGPHIQVVADHLRNVFETYRRTGRFETFRSC
>Mature_316_residues
MNHAQDAESDMTAPVQHPLPMLDIDVLRTFVAIADTGSFSSAANAVFRTPSAVSMQIKKLEEQLGVAVFDRDARSVTLTG
DGEILLGYARRLLALNREAVSKFVAPTVTGIVRLGSPDDIGECVLPLVLKRFAETHPGVTVDVVIDQSSNLRKRLDERRL
DVTLVNISQAVPTRDDVEIMLDEELVWAGAKCGTAYRRDPLPLSIWEEGCAWRANALQALEKSGRPYRVAYMSSHSTGQR
AAILADLAIAPFSKTLLGEGIVALGPEQGLPPLGRYQLGMVIKQEAGPHIQVVADHLRNVFETYRRTGRFETFRSC

Specific function: Not Known, Does Not Seem To Act On The Proton Translocating NADH Dehydrogenase Genes (Nuoa-N) Which Are Part Of The Lrha Operon. [C]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=256, Percent_Identity=32.03125, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI48994962, Length=163, Percent_Identity=32.5153374233129, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1786713, Length=74, Percent_Identity=54.0540540540541, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787806, Length=145, Percent_Identity=28.2758620689655, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1790399, Length=206, Percent_Identity=28.1553398058252, Blast_Score=68, Evalue=8e-13,
Organism=Escherichia coli, GI1790208, Length=154, Percent_Identity=27.9220779220779, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI145693105, Length=197, Percent_Identity=28.4263959390863, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1786401, Length=143, Percent_Identity=34.965034965035, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1787601, Length=151, Percent_Identity=29.1390728476821, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI157672245, Length=137, Percent_Identity=33.5766423357664, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI2367136, Length=153, Percent_Identity=30.0653594771242, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34633; Mature: 34633

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNHAQDAESDMTAPVQHPLPMLDIDVLRTFVAIADTGSFSSAANAVFRTPSAVSMQIKKL
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHH
EEQLGVAVFDRDARSVTLTGDGEILLGYARRLLALNREAVSKFVAPTVTGIVRLGSPDDI
HHHHCEEEEECCCCEEEEECCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHEEECCCCCCH
GECVLPLVLKRFAETHPGVTVDVVIDQSSNLRKRLDERRLDVTLVNISQAVPTRDDVEIM
HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCEEEEEEHHHCCCCCCCEEEE
LDEELVWAGAKCGTAYRRDPLPLSIWEEGCAWRANALQALEKSGRPYRVAYMSSHSTGQR
ECCHHHCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCH
AAILADLAIAPFSKTLLGEGIVALGPEQGLPPLGRYQLGMVIKQEAGPHIQVVADHLRNV
HHHHHHHHHCCHHHHHHHCCCEEECCCCCCCCCCCHHCCEEEECCCCCCHHHHHHHHHHH
FETYRRTGRFETFRSC
HHHHHHCCCCHHHHCC
>Mature Secondary Structure
MNHAQDAESDMTAPVQHPLPMLDIDVLRTFVAIADTGSFSSAANAVFRTPSAVSMQIKKL
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHH
EEQLGVAVFDRDARSVTLTGDGEILLGYARRLLALNREAVSKFVAPTVTGIVRLGSPDDI
HHHHCEEEEECCCCEEEEECCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHEEECCCCCCH
GECVLPLVLKRFAETHPGVTVDVVIDQSSNLRKRLDERRLDVTLVNISQAVPTRDDVEIM
HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCEEEEEEHHHCCCCCCCEEEE
LDEELVWAGAKCGTAYRRDPLPLSIWEEGCAWRANALQALEKSGRPYRVAYMSSHSTGQR
ECCHHHCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCH
AAILADLAIAPFSKTLLGEGIVALGPEQGLPPLGRYQLGMVIKQEAGPHIQVVADHLRNV
HHHHHHHHHCCHHHHHHHCCCEEECCCCCCCCCCCHHCCEEEECCCCCCHHHHHHHHHHH
FETYRRTGRFETFRSC
HHHHHHCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2180928 [H]