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The map label for this gene is yhdW [H]

Identifier: 225852663

GI number: 225852663

Start: 1163808

End: 1164548

Strand: Direct

Name: yhdW [H]

Synonym: BMEA_A1209

Alternate gene names: 225852663

Gene position: 1163808-1164548 (Clockwise)

Preceding gene: 225852662

Following gene: 225852664

Centisome position: 54.75

GC content: 57.35

Gene sequence:

>741_bases
ATGGCCTCCTCCGATAAATCATCCATCGCATGGCTTAAAAAGCGGCCAATCGCACATCGCGGGCTGCATGACCAGAACAA
GACGTGCTGGGAAAATACCCTTTCCGCATTCGATGCGGCGGCAAAGGCAGGCTTCGCCATCGAATGCGACGCGCATCTGA
CCAGGGATGGCGGCGTGGTCGTCTTTCACGACGACGACCTGAAACGCCTTGCAGGCTGCGAGGGCCGCATTTGCGAACTC
ACGACAGATGAAGCAACTGCGCTGCATATTGGCGGCACCGCCGACCATGTACCGACGCTTCGCCAGATGCTTGATCTGGT
TGACGGGCGGGTGCCGCTTGTCATCGAGCTGAAAGGCATTGAAGGCCGCGATGACGGATTGGTGGCGGCAGTCGCCAAAG
AGCTTTCCCCCTACAAGGGGGAAGCCGCGATCATGTCGTTCGACCATCACCTGATCCGTCGTTTCACCGCTGACGCACCG
GGGATTCCCGGCGGACTGACAGCGGAAGGAACGCGCATGCAGGATTTCGAGAAACATTTTTCCATGCTCGCGCATGGGAT
TTCCTTCGTGTCCTACAATGTGCACCACCTGCCAAACCCGTTCGTTACTTTTGTGCGCGAGCGGCTTCAGATACCGGTTA
TCAGCTGGACGGTACGGGATCGCGAGATGCAAAAGTACAGCGACCTCAATGTCGACCAGATCACATTTGAAGGCTTTGAT
CCGCGGGCCCTCATTGCTTGA

Upstream 100 bases:

>100_bases
CTGGGCGATGCGGGCAAACATGCGCGTTCTGCCGTAGGCGTCGCAAGCCTGCCGCTCAATGCGCCTGTAGAAGTCGAAGC
CATCATCGAGGTCGCGTAAT

Downstream 100 bases:

>100_bases
CGCGCAAGGGGCCAGCGCCGCAAACTGCATTCGACAGCGGCAAGGGGAACAGCGGTGAGCGACCACGATCCGCCAGACGG
CCAAAGTTTCGTTCTTCGGG

Product: glycerophosphoryl diester phosphodiesterase

Products: NA

Alternate protein names: Glycerophosphodiester phosphodiesterase [H]

Number of amino acids: Translated: 246; Mature: 245

Protein sequence:

>246_residues
MASSDKSSIAWLKKRPIAHRGLHDQNKTCWENTLSAFDAAAKAGFAIECDAHLTRDGGVVVFHDDDLKRLAGCEGRICEL
TTDEATALHIGGTADHVPTLRQMLDLVDGRVPLVIELKGIEGRDDGLVAAVAKELSPYKGEAAIMSFDHHLIRRFTADAP
GIPGGLTAEGTRMQDFEKHFSMLAHGISFVSYNVHHLPNPFVTFVRERLQIPVISWTVRDREMQKYSDLNVDQITFEGFD
PRALIA

Sequences:

>Translated_246_residues
MASSDKSSIAWLKKRPIAHRGLHDQNKTCWENTLSAFDAAAKAGFAIECDAHLTRDGGVVVFHDDDLKRLAGCEGRICEL
TTDEATALHIGGTADHVPTLRQMLDLVDGRVPLVIELKGIEGRDDGLVAAVAKELSPYKGEAAIMSFDHHLIRRFTADAP
GIPGGLTAEGTRMQDFEKHFSMLAHGISFVSYNVHHLPNPFVTFVRERLQIPVISWTVRDREMQKYSDLNVDQITFEGFD
PRALIA
>Mature_245_residues
ASSDKSSIAWLKKRPIAHRGLHDQNKTCWENTLSAFDAAAKAGFAIECDAHLTRDGGVVVFHDDDLKRLAGCEGRICELT
TDEATALHIGGTADHVPTLRQMLDLVDGRVPLVIELKGIEGRDDGLVAAVAKELSPYKGEAAIMSFDHHLIRRFTADAPG
IPGGLTAEGTRMQDFEKHFSMLAHGISFVSYNVHHLPNPFVTFVRERLQIPVISWTVRDREMQKYSDLNVDQITFEGFDP
RALIA

Specific function: Glycerophosphoryl diester phosphodiesterase hydrolyzes deacylated phospholipids to sn-glycerol 3-phosphate (G3P) and the corresponding alcohols [H]

COG id: COG0584

COG function: function code C; Glycerophosphoryl diester phosphodiesterase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GDPD domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004129
- InterPro:   IPR017946 [H]

Pfam domain/function: PF03009 GDPD [H]

EC number: =3.1.4.46 [H]

Molecular weight: Translated: 27216; Mature: 27085

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASSDKSSIAWLKKRPIAHRGLHDQNKTCWENTLSAFDAAAKAGFAIECDAHLTRDGGVV
CCCCCCHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCEEECCCCEE
VFHDDDLKRLAGCEGRICELTTDEATALHIGGTADHVPTLRQMLDLVDGRVPLVIELKGI
EEECCCHHHHHCCCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECC
EGRDDGLVAAVAKELSPYKGEAAIMSFDHHLIRRFTADAPGIPGGLTAEGTRMQDFEKHF
CCCCCCHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
SMLAHGISFVSYNVHHLPNPFVTFVRERLQIPVISWTVRDREMQKYSDLNVDQITFEGFD
HHHHHHHHHEEECHHHCCCHHHHHHHHHHCCCEEEEEECHHHHHHHHCCCCEEEEECCCC
PRALIA
CCCCCC
>Mature Secondary Structure 
ASSDKSSIAWLKKRPIAHRGLHDQNKTCWENTLSAFDAAAKAGFAIECDAHLTRDGGVV
CCCCCHHHHHHHHCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCEEEEECCEEECCCCEE
VFHDDDLKRLAGCEGRICELTTDEATALHIGGTADHVPTLRQMLDLVDGRVPLVIELKGI
EEECCCHHHHHCCCCCEEEEECCCCEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEEECC
EGRDDGLVAAVAKELSPYKGEAAIMSFDHHLIRRFTADAPGIPGGLTAEGTRMQDFEKHF
CCCCCCHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
SMLAHGISFVSYNVHHLPNPFVTFVRERLQIPVISWTVRDREMQKYSDLNVDQITFEGFD
HHHHHHHHHEEECHHHCCCHHHHHHHHHHCCCEEEEEECHHHHHHHHCCCCEEEEECCCC
PRALIA
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]