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The map label for this gene is ynhG [H]

Identifier: 225852635

GI number: 225852635

Start: 1133212

End: 1133904

Strand: Reverse

Name: ynhG [H]

Synonym: BMEA_A1180

Alternate gene names: 225852635

Gene position: 1133904-1133212 (Counterclockwise)

Preceding gene: 225852636

Following gene: 225852634

Centisome position: 53.34

GC content: 57.14

Gene sequence:

>693_bases
ATGTTTTCACGCCGTATTCTGTTGGCTGGTATAGCAAGCCTTTGCATGGGAGCCGCTGCTCCTGCCTTTGCTGCTTCGCC
GGTCAATGCTGAAGCGCAGCTCGATGAAGCTGCGGCAAATGTCCAGAAGGTCGCTCTGGCGAGCAACGCCAAGGCAAACC
CGGACAAGCCGAAGAAGAAAACGGCTGCCAGGACCAACAATACGGCCAAGGCCAACAAATATAGCATCGATCCGAAGTTT
CGTCCGCAGGACGTGACCTTCACCGGCTACAAGCCCGGCACAATCGTGATCGATCCCAAGAAGCGCTTCCTCTATCTGGT
GGAAACTTCCACGACCGCGCGCCGCTATGGCATTGCCGTTGGCAAGCAGGGACTGGAATTTCAGGGCAAGGCCACCATCA
GCGCCAAGCGCGAATGGCCGCGCTGGATTCCCACCAAGGAAATGATTGAGCGCGATCCGGCCCATTATGGCCGCTTCAAG
AACGGCATGGATGGTGGCCCGGGCAATCCGCTCGGCTCGCGTGCGATGTATCTCTTCCAGGGCAACAAAGACACCTATAT
CCGCATCCACGGTACGGTGCAGCCATGGACCATCGGCAGCTCTGCCTCCAATGGCTGCTTCCGCATGATCAACGAAGACG
TGATGGATCTCTACGACCGCGTTACGCTTGGTACGGAAGTGGTTGTTCTGTAA

Upstream 100 bases:

>100_bases
ATTGAGATGCTCCCAAGTTTACAGTATGCAAAGCGTAAGCCTGAACGCAGGGGTTGCGGCAGGTATTTTCCGCTCGTGCT
TGGATTTTCGGGAACTGACC

Downstream 100 bases:

>100_bases
ACCGGGAATTCCTGTATGGGATCGGCCGGGCTCACGGGCCCGGCCTTTTCTTTTGCCCAACCTTCAGAATGCGGAAACTG
TGGATTTCCAGCTTCGCCAT

Product: ErfK/YbiS/YcfS/YnhG family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MFSRRILLAGIASLCMGAAAPAFAASPVNAEAQLDEAAANVQKVALASNAKANPDKPKKKTAARTNNTAKANKYSIDPKF
RPQDVTFTGYKPGTIVIDPKKRFLYLVETSTTARRYGIAVGKQGLEFQGKATISAKREWPRWIPTKEMIERDPAHYGRFK
NGMDGGPGNPLGSRAMYLFQGNKDTYIRIHGTVQPWTIGSSASNGCFRMINEDVMDLYDRVTLGTEVVVL

Sequences:

>Translated_230_residues
MFSRRILLAGIASLCMGAAAPAFAASPVNAEAQLDEAAANVQKVALASNAKANPDKPKKKTAARTNNTAKANKYSIDPKF
RPQDVTFTGYKPGTIVIDPKKRFLYLVETSTTARRYGIAVGKQGLEFQGKATISAKREWPRWIPTKEMIERDPAHYGRFK
NGMDGGPGNPLGSRAMYLFQGNKDTYIRIHGTVQPWTIGSSASNGCFRMINEDVMDLYDRVTLGTEVVVL
>Mature_230_residues
MFSRRILLAGIASLCMGAAAPAFAASPVNAEAQLDEAAANVQKVALASNAKANPDKPKKKTAARTNNTAKANKYSIDPKF
RPQDVTFTGYKPGTIVIDPKKRFLYLVETSTTARRYGIAVGKQGLEFQGKATISAKREWPRWIPTKEMIERDPAHYGRFK
NGMDGGPGNPLGSRAMYLFQGNKDTYIRIHGTVQPWTIGSSASNGCFRMINEDVMDLYDRVTLGTEVVVL

Specific function: Responsible, at least in part, for generating a meso- diaminopimelyl-3-a meso-diaminopimelyl-3 cross-link [H]

COG id: COG1376

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1787968, Length=139, Percent_Identity=34.5323741007194, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1788299, Length=141, Percent_Identity=31.9148936170213, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR005490 [H]

Pfam domain/function: PF01476 LysM; PF03734 YkuD [H]

EC number: NA

Molecular weight: Translated: 25190; Mature: 25190

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSRRILLAGIASLCMGAAAPAFAASPVNAEAQLDEAAANVQKVALASNAKANPDKPKKK
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHECCCCCCCCCCCCHH
TAARTNNTAKANKYSIDPKFRPQDVTFTGYKPGTIVIDPKKRFLYLVETSTTARRYGIAV
HHHCCCCCCCCCEEECCCCCCCCCEEECCCCCCEEEECCCCEEEEEEECCCCHHHHHHEE
GKQGLEFQGKATISAKREWPRWIPTKEMIERDPAHYGRFKNGMDGGPGNPLGSRAMYLFQ
CCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCHHHHHCCCCCCCCCCCCCCCCEEEEEE
GNKDTYIRIHGTVQPWTIGSSASNGCFRMINEDVMDLYDRVTLGTEVVVL
CCCCEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEC
>Mature Secondary Structure
MFSRRILLAGIASLCMGAAAPAFAASPVNAEAQLDEAAANVQKVALASNAKANPDKPKKK
CCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHECCCCCCCCCCCCHH
TAARTNNTAKANKYSIDPKFRPQDVTFTGYKPGTIVIDPKKRFLYLVETSTTARRYGIAV
HHHCCCCCCCCCEEECCCCCCCCCEEECCCCCCEEEECCCCEEEEEEECCCCHHHHHHEE
GKQGLEFQGKATISAKREWPRWIPTKEMIERDPAHYGRFKNGMDGGPGNPLGSRAMYLFQ
CCCCCCCCCCEEEEECCCCCCCCCCHHHHHCCCHHHHHCCCCCCCCCCCCCCCCEEEEEE
GNKDTYIRIHGTVQPWTIGSSASNGCFRMINEDVMDLYDRVTLGTEVVVL
CCCCEEEEEECCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 9097039 [H]