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The map label for this gene is tnpR [H]

Identifier: 225852583

GI number: 225852583

Start: 1072535

End: 1073164

Strand: Reverse

Name: tnpR [H]

Synonym: BMEA_A1124

Alternate gene names: 225852583

Gene position: 1073164-1072535 (Counterclockwise)

Preceding gene: 225852584

Following gene: 225852582

Centisome position: 50.49

GC content: 58.1

Gene sequence:

>630_bases
ATGGGGGCCAACATGAACAATGCAACCGTCGCCAACGTCGCCGCTACCTACCGGGGTCAGCTTGTGGGGTACGCTCGTAC
ATCGACAACCGATCAGAAGGCAGGACTTGCCGCACAAGAGCGAGACCTTCAAGCGGCAGGGTGTGATCGCATATTCAGTG
AACAGACCTCTGCCAAGGATAGTAAGAGGCCGGAACTGCAACGCGCCCTCGATCATCTGCGAGAAGGCGACACGTTCATT
GTTACCAAGCTGGACCGTCTGGCCCGTTCGGTTGCTGACTTGGTTGATCTCACCGGGCAACTCAGCAGCAAGGGCGTCAG
TTTGCGTATCCTCGCCATGAACCTCGACACGGCAACGCCGACAGGGAAGCTTATGCTGAACCTTTTGGGATCGATTGCGG
AGTTCGAGCGGGAACTGATGCTGGAACGCCAGCGGGAAGGTATTGCAGCGGCCAAGGCAGGCGGCAAGTACAAGGGCAGG
GCACCCACCGCACAGCGTCAGGCAGACGAGATTATCCGCTTGAAGGACGAAGGGAAGACCGTCGCGGAAATCATGGCGGC
AACCAAGGCGGGGCGGTCTAGTGTATTCAGCATTCTTAAGGAGGCAGGAAGGACGGAAGCCCAGCTATGA

Upstream 100 bases:

>100_bases
GGTGTTGGACTGATGGCGTATGCAGCAATAAAGTCCAATTAGAGTGTGTATTGACTTTATGGACTATTAGTCCGATAACT
CCTATAAACCTATTTGGATT

Downstream 100 bases:

>100_bases
CCGGAAGCAACTCAACGCTGTTCAGGACATGCTTGCCATGGGAGCCGGTACATCTGAGATTGCTAAGGCGACGGGGTTGA
CACGACAGACCGTTATCAGG

Product: DNA-invertase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 209; Mature: 208

Protein sequence:

>209_residues
MGANMNNATVANVAATYRGQLVGYARTSTTDQKAGLAAQERDLQAAGCDRIFSEQTSAKDSKRPELQRALDHLREGDTFI
VTKLDRLARSVADLVDLTGQLSSKGVSLRILAMNLDTATPTGKLMLNLLGSIAEFERELMLERQREGIAAAKAGGKYKGR
APTAQRQADEIIRLKDEGKTVAEIMAATKAGRSSVFSILKEAGRTEAQL

Sequences:

>Translated_209_residues
MGANMNNATVANVAATYRGQLVGYARTSTTDQKAGLAAQERDLQAAGCDRIFSEQTSAKDSKRPELQRALDHLREGDTFI
VTKLDRLARSVADLVDLTGQLSSKGVSLRILAMNLDTATPTGKLMLNLLGSIAEFERELMLERQREGIAAAKAGGKYKGR
APTAQRQADEIIRLKDEGKTVAEIMAATKAGRSSVFSILKEAGRTEAQL
>Mature_208_residues
GANMNNATVANVAATYRGQLVGYARTSTTDQKAGLAAQERDLQAAGCDRIFSEQTSAKDSKRPELQRALDHLREGDTFIV
TKLDRLARSVADLVDLTGQLSSKGVSLRILAMNLDTATPTGKLMLNLLGSIAEFERELMLERQREGIAAAKAGGKYKGRA
PTAQRQADEIIRLKDEGKTVAEIMAATKAGRSSVFSILKEAGRTEAQL

Specific function: Resolvase catalyzes the resolution (a site-specific recombination) of the cointegrated replicon to yield the final transposition products [H]

COG id: COG1961

COG function: function code L; Site-specific recombinases, DNA invertase Pin homologs

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the site-specific recombinase resolvase family [H]

Homologues:

Organism=Escherichia coli, GI1787404, Length=142, Percent_Identity=43.6619718309859, Blast_Score=125, Evalue=2e-30,
Organism=Escherichia coli, GI1787638, Length=186, Percent_Identity=34.9462365591398, Blast_Score=106, Evalue=1e-24,
Organism=Escherichia coli, GI1787827, Length=186, Percent_Identity=35.4838709677419, Blast_Score=105, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR006118
- InterPro:   IPR006119
- InterPro:   IPR006120 [H]

Pfam domain/function: PF02796 HTH_7; PF00239 Resolvase [H]

EC number: NA

Molecular weight: Translated: 22525; Mature: 22394

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: PS00398 RECOMBINASES_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGANMNNATVANVAATYRGQLVGYARTSTTDQKAGLAAQERDLQAAGCDRIFSEQTSAKD
CCCCCCCCHHHHHHHHHHHHEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCC
SKRPELQRALDHLREGDTFIVTKLDRLARSVADLVDLTGQLSSKGVSLRILAMNLDTATP
CCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
TGKLMLNLLGSIAEFERELMLERQREGIAAAKAGGKYKGRAPTAQRQADEIIRLKDEGKT
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHH
VAEIMAATKAGRSSVFSILKEAGRTEAQL
HHHHHHHHHCCHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
GANMNNATVANVAATYRGQLVGYARTSTTDQKAGLAAQERDLQAAGCDRIFSEQTSAKD
CCCCCCCHHHHHHHHHHHHEEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHCCCC
SKRPELQRALDHLREGDTFIVTKLDRLARSVADLVDLTGQLSSKGVSLRILAMNLDTATP
CCCHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCCC
TGKLMLNLLGSIAEFERELMLERQREGIAAAKAGGKYKGRAPTAQRQADEIIRLKDEGKT
HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCHH
VAEIMAATKAGRSSVFSILKEAGRTEAQL
HHHHHHHHHCCHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2170815; 2555186 [H]