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The map label for this gene is secD [H]

Identifier: 225852404

GI number: 225852404

Start: 885255

End: 887582

Strand: Direct

Name: secD [H]

Synonym: BMEA_A0930

Alternate gene names: 225852404

Gene position: 885255-887582 (Clockwise)

Preceding gene: 225852403

Following gene: 225852405

Centisome position: 41.65

GC content: 56.7

Gene sequence:

>2328_bases
TTGGGTGAACTCCGGCAATGCTTCATCCAAGCTGAAACGGACTTGCATTCCATGCTCTATTTTTCACGCTGGAAATCTGC
ACTGATATGGCTGGCAGTCCTTGTCAGCCTCATCATCGCATCTCCAAATTTTTTCTCGCGTGAAACGCTGGCAAATCTGC
CGGATTTTCTGCCCAAGAAGCAGGTATCGCTGGGGCTCGACCTTTCGGGCGGTTCGCGGCTTATTCTTCAGGTGCAGAAT
GCAGGCAAGACCGATCTGGAGACGACTGCCAATATCATGCGGCAGCGTCTGGAAGAGCTTGGCTATGGCAATCCCGTTGT
CGAGGGAGAGGGGCGCAATCAGATTCGCGTGGAGGTTCCGGGCCTTTACGATGCGCAGCTTCTCAAAGATATTCTCACCA
TTCGCGGAAATCTTTCCTTCCGCGCCATGGACGACACCATGTCGCCGGATGACGCCATTCGCGGCACACCGCTTGCCGAT
AGCGAAATCGTCTATTCCTTTGATGATCCTCCGGTTGGTTATCTTCTGAAAAAAACACCCATTCTCACCGGGCATGACAT
CACGGATGCCAAGGCGAGTATTTCCGCCGACGATGGCCAGCCGGTCATCACGCTGACACTGGACGACAACGGACGCCGGC
GTCTGGCCGATCTGACGGCGCAGGGCAATGAGAATTCCTTCGCCATCGTCGTTGATAATCAGGTGGTTTCCGCGCCCACG
GTTTCCGGCCCGCTCGACACCAGTGAATTGCAGATCGAAGGCGCATTCGATTTACAGGCCGCCAATAATATGGCCGTGGT
TCTGCGCTCTGGCGCCTTGCCGCAAGCGGTGACTGTGCTTGAAGAGCGCACCATCGCCTCCGCGCTCGGTGAGGATTATG
CGAGTGCGGCAGTGCTTGCGGCCCTTCTGGCGGCACTGGTGGTCGGCCTCTTCATGGTGCTTTCCTATGGCATTCTGGGT
GTCATCGCCCTGGTTGCGCTTGTGGTCAATATCATCATCCTGACGGCTGTTCTGTCGCTCATTGGCGCTTCGATAAGCCT
TGCGAGCATTGCAGGTCTCGTCTTGACCATCGGCCTTGCGGTCGATGCGCATATTCTGATCTATGAGCGTGTACGCGAGG
ATCGCCGCAAGGGCTATTCCGTCGTGCAGGCGATGGAATCGGGCTTTTATCGCGCCCTTTCCACCATTGTGGATGCCAAT
CTTACCACGCTTATCGCCGCACTCGTTCTGTTCCTTCTGGGGTCGGGTACGGTGCATGGTTTTGCGCTCACGGTCGCAAT
CGGCATCGGCACGACGCTTTTCACCACGCTCACTTTCACGCGCCTGCTGATCGCCCAATGGGTGCGCACCGCCAAGCCGA
AGGAAGTGCCCAAGCGTCGCCTGAAACTGGTGCCAACCGTCACTCATATTCCCTTCATGCGCCTCCAGTTCGTAACGCTC
GGCATTTCGGTGCTGGCCTGCGCAATCGTGGTCGCGCTTTTCGTCAATATCGGCTTCAACTACGGCATCGACTTTCGTGG
CGGTTCGATGGTCGAGCTGCAGGCGCGCAATGGCGATGCCAATCTGGAAGATATCAACGAGCGGCTCGCGGAGCTGAATA
TCGATAGCGCCCGCGTTCTGCCTGCGAAATCGCCGCGCTCGGCCCTTGTCATTATCGGCAGTCAGGAAGTGGGCGACGAT
GCGGAGCAGACCGTTGCCGTCAAGCTTCGCGGTGAATTCGAGCAGGATTATTCCTTCCAGCGGGTCGATGTGGTCGGGCC
GACCGTATCGGAACAATTGTCGCGCGCAGGCGTGCTCGCTGTCATCCTGTCGCTGATTGGCATCTTCATCTATGTCTGGT
TCCGCTTCCGCTGGCAGCTCGCACTGGGCGCGGTGCTTTCCACATTGCATGATGTCGTCATTCTTTCAGGCATGTTCATC
GTTTTCCGCATGGAATTCAATTTGTGGAGCGTGGCGGCAATCCTCACGATCATTGGCTATTCGCTGAACGATACGGTGGT
GATCTATGACCGGGTGCGCGAGAACCTTCGCCGTTACAAGAGTGCGCCATTGCCCGCGATCATCGATGCCTCGATCAACC
AGACCCTGTCGCGAACGCTGTTGACCTCTTTCGTCACCTTCCTGGCACATGTTCCGCTTTATGCTTTTGGCGGCTCGGAA
ATTCGCATGTTTGCGCTGGCGCTCAGTGTCGGTATCATTGTGGCGAGTTATTCTTCAATCTTCATCGCAGCACCGCTGCT
TGTTCAGTTCGGTCTCAAGCCGCGCGAAACCGATGCCGGTGACGCGGTGGATGCGGAGCTTGCGCAATCGCTCAATCTGG
AAAGCTGA

Upstream 100 bases:

>100_bases
GCAGGCGGGCTCCGGTAAGGTTTAAATAACCTGAGCCCGTTCATTATGCAGCACGCGCGCAAAATCGCGTTTGCGTGCAA
ATAGCCGGAAGATTTTCCCT

Downstream 100 bases:

>100_bases
AAATGGCGAAGGGAATAGAAATACGCGAAGCCCATTTTCCGGGCCGCGCGCCCATCGATGCCTATGGCAATGGTGGGTTC
CGCTTTGCCGAAATGTCGCA

Product: bifunctional preprotein translocase subunit SecD/SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 775; Mature: 774

Protein sequence:

>775_residues
MGELRQCFIQAETDLHSMLYFSRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQN
AGKTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPLAD
SEIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPT
VSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLEERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILG
VIALVALVVNIIILTAVLSLIGASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDAN
LTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRLKLVPTVTHIPFMRLQFVTL
GISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNGDANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDD
AEQTVAVKLRGEFEQDYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVILSGMFI
VFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRYKSAPLPAIIDASINQTLSRTLLTSFVTFLAHVPLYAFGGSE
IRMFALALSVGIIVASYSSIFIAAPLLVQFGLKPRETDAGDAVDAELAQSLNLES

Sequences:

>Translated_775_residues
MGELRQCFIQAETDLHSMLYFSRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQN
AGKTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPLAD
SEIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPT
VSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLEERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILG
VIALVALVVNIIILTAVLSLIGASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDAN
LTTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRLKLVPTVTHIPFMRLQFVTL
GISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNGDANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDD
AEQTVAVKLRGEFEQDYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVILSGMFI
VFRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRYKSAPLPAIIDASINQTLSRTLLTSFVTFLAHVPLYAFGGSE
IRMFALALSVGIIVASYSSIFIAAPLLVQFGLKPRETDAGDAVDAELAQSLNLES
>Mature_774_residues
GELRQCFIQAETDLHSMLYFSRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKKQVSLGLDLSGGSRLILQVQNA
GKTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVPGLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPLADS
EIVYSFDDPPVGYLLKKTPILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPTV
SGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLEERTIASALGEDYASAAVLAALLAALVVGLFMVLSYGILGV
IALVALVVNIIILTAVLSLIGASISLASIAGLVLTIGLAVDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANL
TTLIAALVLFLLGSGTVHGFALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRLKLVPTVTHIPFMRLQFVTLG
ISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNGDANLEDINERLAELNIDSARVLPAKSPRSALVIIGSQEVGDDA
EQTVAVKLRGEFEQDYSFQRVDVVGPTVSEQLSRAGVLAVILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVILSGMFIV
FRMEFNLWSVAAILTIIGYSLNDTVVIYDRVRENLRRYKSAPLPAIIDASINQTLSRTLLTSFVTFLAHVPLYAFGGSEI
RMFALALSVGIIVASYSSIFIAAPLLVQFGLKPRETDAGDAVDAELAQSLNLES

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=414, Percent_Identity=32.8502415458937, Blast_Score=211, Evalue=2e-55,
Organism=Escherichia coli, GI1786610, Length=300, Percent_Identity=33.3333333333333, Blast_Score=175, Evalue=1e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 83915; Mature: 83784

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGELRQCFIQAETDLHSMLYFSRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKK
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHCCCC
QVSLGLDLSGGSRLILQVQNAGKTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVP
HHEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEECC
GLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPLADSEIVYSFDDPPVGYLLKKTP
CCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHEECCC
ILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPT
EECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEHHHHHCCCCCCEEEEEECCCEECCCC
VSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLEERTIASALGEDYASAAVLA
CCCCCCCCCEEEEECEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLIGASISLASIAGLVLTIGLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANLTTLIAALVLFLLGSGTVHG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
FALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRLKLVPTVTHIPFMRLQFVTL
HHEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCHHHHHHHHH
GISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNGDANLEDINERLAELNIDSARVL
HHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCEEC
PAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQDYSFQRVDVVGPTVSEQLSRAGVLA
CCCCCCCEEEEEECCCCCCCCHHEEEEEEECCCCCCCCEEEEEEECCCHHHHHHHCCHHH
VILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVILSGMFIVFRMEFNLWSVAAILTIIGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCC
SLNDTVVIYDRVRENLRRYKSAPLPAIIDASINQTLSRTLLTSFVTFLAHVPLYAFGGSE
CCCCEEEEHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCEEECCCH
IRMFALALSVGIIVASYSSIFIAAPLLVQFGLKPRETDAGDAVDAELAQSLNLES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC
>Mature Secondary Structure 
GELRQCFIQAETDLHSMLYFSRWKSALIWLAVLVSLIIASPNFFSRETLANLPDFLPKK
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHCCCC
QVSLGLDLSGGSRLILQVQNAGKTDLETTANIMRQRLEELGYGNPVVEGEGRNQIRVEVP
HHEEEEEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEECC
GLYDAQLLKDILTIRGNLSFRAMDDTMSPDDAIRGTPLADSEIVYSFDDPPVGYLLKKTP
CCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCHHEECCC
ILTGHDITDAKASISADDGQPVITLTLDDNGRRRLADLTAQGNENSFAIVVDNQVVSAPT
EECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEHHHHHCCCCCCEEEEEECCCEECCCC
VSGPLDTSELQIEGAFDLQAANNMAVVLRSGALPQAVTVLEERTIASALGEDYASAAVLA
CCCCCCCCCEEEEECEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ALLAALVVGLFMVLSYGILGVIALVALVVNIIILTAVLSLIGASISLASIAGLVLTIGLA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
VDAHILIYERVREDRRKGYSVVQAMESGFYRALSTIVDANLTTLIAALVLFLLGSGTVHG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHH
FALTVAIGIGTTLFTTLTFTRLLIAQWVRTAKPKEVPKRRLKLVPTVTHIPFMRLQFVTL
HHEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHCCHHHHHHHHH
GISVLACAIVVALFVNIGFNYGIDFRGGSMVELQARNGDANLEDINERLAELNIDSARVL
HHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCEEC
PAKSPRSALVIIGSQEVGDDAEQTVAVKLRGEFEQDYSFQRVDVVGPTVSEQLSRAGVLA
CCCCCCCEEEEEECCCCCCCCHHEEEEEEECCCCCCCCEEEEEEECCCHHHHHHHCCHHH
VILSLIGIFIYVWFRFRWQLALGAVLSTLHDVVILSGMFIVFRMEFNLWSVAAILTIIGY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCC
SLNDTVVIYDRVRENLRRYKSAPLPAIIDASINQTLSRTLLTSFVTFLAHVPLYAFGGSE
CCCCEEEEHHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHHHHCCCEEECCCH
IRMFALALSVGIIVASYSSIFIAAPLLVQFGLKPRETDAGDAVDAELAQSLNLES
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9826342 [H]