Click here to switch to the map view.

The map label for this gene is ccmF [H]

Identifier: 225852134

GI number: 225852134

Start: 617507

End: 619498

Strand: Direct

Name: ccmF [H]

Synonym: BMEA_A0647

Alternate gene names: 225852134

Gene position: 617507-619498 (Clockwise)

Preceding gene: 225852133

Following gene: 225852135

Centisome position: 29.05

GC content: 60.04

Gene sequence:

>1992_bases
ATGAGTGTCGAGATCGGCCATTTTGCTCTGGTGCTGGCGCTTGCGCTGTCGATTGTTCAATCCATCGTGCCGGTGGTCGG
CGCGCATCGCCGTGATGCGCAACTGATGGCAGTGGCCGTGCCAACGGCGCTTGCAGTCTTCGCTCTGATCGTTCTGGCAT
CCGCCGCTCTGATCCACGCCTATGTCGTTTCCGATTTCTCGGTCCTTAACGTGGTCGAGAACTCCCATTCGCAAAAGCCG
CTTCTCTACAAGATCACCGGTGTCTGGGGCAATCATGAAGGCTCCATGCTGCTCTGGGTGTTCATCCTCACCCTTTTCAG
CGCGCTGGTTGCAGCCTTTTCCGGCAATCTGCCTGAAACGCTGCGTGCCAATGTTCTGGCCGTGCAGGGCTGGATTGGCA
CCGCCTTTCTCGCATTCATCATTTTCACGTCCAATCCCTTCACCCGCATTTTCCCGGCTCCCATGGAAGGCGGCGATCTC
AACCCGGTCCTTCAGGATATCGGCCTCGCCATCCATCCGCCGCTTCTTTATCTGGGTTATGTCGGCTTTTCGGTCTGTTT
CTCCTTTGCTGTTGCGGCGCTTCTCGAAGGCCGTCTCGACGCGGCATGGGCGCGCTGGGTGCGCCCATGGGCGCTCATGG
CGTGGATGTTCCTCACCGGCGGTATCGCAATGGGTTCTTACTGGGCCTATTATGAACTGGGTTGGGGTGGCTGGTGGTTC
TGGGATCCGGTTGAAAATGCATCGCTCATGCCATGGCTGGTCGGGACGGCGCTGCTTCATTCCGCCATCGTCATGGAGAA
GCGCTCGGCGCTCAAGATCTGGACGGTGCTTCTCGCCATTCTCACCTTCTCGCTGTCATTGCTCGGCACTTTCCTTGTGC
GCTCCGGCGTGCTGACCTCCGTGCACAGTTTCGCGACCGATCCGGGGCGCGGCCTGTTCATTCTGGGCATTCTCGCGCTC
TTCATTGGCGGCTCGCTGTCGCTCTTCGCGCTGCGCGTCCAAAGCCTGAGCGCAGGCGGCATTTTCCATCCGATTTCCCG
CGAAGGCGCGCTGGTCTTCAACAATCTCTTTCTGACGACTGCCGCCGCAACCGTTCTCATCGGAACACTCTATCCGTTGC
TTCTTGAAGTTACGACCGGCGAAAAGATTTCCGTTGGCGCACCCTTCTTCAACATGACCTTCGGCCCGCTGATGGTGCCG
CTCCTGTTTGCCGTGCCTTTCGGCCCGCTGCTCGCATGGAAACGCGGTGATCTTTATGGCGTCGGGCAGCGCCTGATGAC
GGCTTTCGCATTGTCGCTGGCCGTTGTCGGCATCATGCTCTGGCGAACCTCCGCGCATTCGGTCCTAGCTGCTCTCGGCA
TCGGTCTTGCGGCATGGCTCATCTTCGGCAGCCTGACCGATCTTGTTCTCAAGGCTGGTATTGGCAAGGTGTCGGCCAGC
AAGGCGTTTGCGCGCTTCAAGGGCCTGCCGCGCTCCGTCTTCGGAACGTCGCTTGCGCATATCGGACTTGGTCTCACGCT
TCTCGGTATTGTCAGCGTCACGACATTCGGTACCGAAAACGTGCTCGTCATGCAGCCCGGCGGGACCGCCAAAGTCCAGA
ATTACACGCTGCGTTTTGAAGGACTGCGCCCCATCACGGGTTCCAACTTCACCGAGAACAGGGGCGCCTTCACGCTGCTT
GATTCCAGTGGCCGCGATCTGGCCGTGATCGAACCGTCCAAGCGGTTCTTCCCTGCGCGCCAGATGCCCACGACTGAATC
CGGTATCAAGACGCTCTGGTTCAGCCAGGTCTATGTCGCCCTTGGTGACGAGCCGGGCAATGGCGCGGTGGTCGTGCGCA
TCTGGTGGAAGCCGCTGGTCACGCTCATCTGGTACGGTGCGCTTGTCATGATGCTGGGTGGCTTGTTCTCGCTGGCCGAC
CGCCGCCTCAGGGTTGGTGCGCCTTCCAAGGTGCGCAGGTCCGCCTCGAAGGAAGCGGAAGCCGTCGCATGA

Upstream 100 bases:

>100_bases
CTTGCCAAGCATGACGAGAACTATGTTCCCAAAGATCTTGCCGACAGCCTGAAGAAAAAGGGCGTATGGGAGGGCAAATG
ACGGGCCGGGGAGACTGCAT

Downstream 100 bases:

>100_bases
AAAAGAATAATCTTTTCCGGGCCCTGCTTATCAGCGCAACATTCGCCTTGCAGGCCACGGCGGCATTTGCCGTCAACCCC
GACGAAGTGCTTTCCGATCC

Product: cytochrome c-type biogenesis protein CcmF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 663; Mature: 662

Protein sequence:

>663_residues
MSVEIGHFALVLALALSIVQSIVPVVGAHRRDAQLMAVAVPTALAVFALIVLASAALIHAYVVSDFSVLNVVENSHSQKP
LLYKITGVWGNHEGSMLLWVFILTLFSALVAAFSGNLPETLRANVLAVQGWIGTAFLAFIIFTSNPFTRIFPAPMEGGDL
NPVLQDIGLAIHPPLLYLGYVGFSVCFSFAVAALLEGRLDAAWARWVRPWALMAWMFLTGGIAMGSYWAYYELGWGGWWF
WDPVENASLMPWLVGTALLHSAIVMEKRSALKIWTVLLAILTFSLSLLGTFLVRSGVLTSVHSFATDPGRGLFILGILAL
FIGGSLSLFALRVQSLSAGGIFHPISREGALVFNNLFLTTAAATVLIGTLYPLLLEVTTGEKISVGAPFFNMTFGPLMVP
LLFAVPFGPLLAWKRGDLYGVGQRLMTAFALSLAVVGIMLWRTSAHSVLAALGIGLAAWLIFGSLTDLVLKAGIGKVSAS
KAFARFKGLPRSVFGTSLAHIGLGLTLLGIVSVTTFGTENVLVMQPGGTAKVQNYTLRFEGLRPITGSNFTENRGAFTLL
DSSGRDLAVIEPSKRFFPARQMPTTESGIKTLWFSQVYVALGDEPGNGAVVVRIWWKPLVTLIWYGALVMMLGGLFSLAD
RRLRVGAPSKVRRSASKEAEAVA

Sequences:

>Translated_663_residues
MSVEIGHFALVLALALSIVQSIVPVVGAHRRDAQLMAVAVPTALAVFALIVLASAALIHAYVVSDFSVLNVVENSHSQKP
LLYKITGVWGNHEGSMLLWVFILTLFSALVAAFSGNLPETLRANVLAVQGWIGTAFLAFIIFTSNPFTRIFPAPMEGGDL
NPVLQDIGLAIHPPLLYLGYVGFSVCFSFAVAALLEGRLDAAWARWVRPWALMAWMFLTGGIAMGSYWAYYELGWGGWWF
WDPVENASLMPWLVGTALLHSAIVMEKRSALKIWTVLLAILTFSLSLLGTFLVRSGVLTSVHSFATDPGRGLFILGILAL
FIGGSLSLFALRVQSLSAGGIFHPISREGALVFNNLFLTTAAATVLIGTLYPLLLEVTTGEKISVGAPFFNMTFGPLMVP
LLFAVPFGPLLAWKRGDLYGVGQRLMTAFALSLAVVGIMLWRTSAHSVLAALGIGLAAWLIFGSLTDLVLKAGIGKVSAS
KAFARFKGLPRSVFGTSLAHIGLGLTLLGIVSVTTFGTENVLVMQPGGTAKVQNYTLRFEGLRPITGSNFTENRGAFTLL
DSSGRDLAVIEPSKRFFPARQMPTTESGIKTLWFSQVYVALGDEPGNGAVVVRIWWKPLVTLIWYGALVMMLGGLFSLAD
RRLRVGAPSKVRRSASKEAEAVA
>Mature_662_residues
SVEIGHFALVLALALSIVQSIVPVVGAHRRDAQLMAVAVPTALAVFALIVLASAALIHAYVVSDFSVLNVVENSHSQKPL
LYKITGVWGNHEGSMLLWVFILTLFSALVAAFSGNLPETLRANVLAVQGWIGTAFLAFIIFTSNPFTRIFPAPMEGGDLN
PVLQDIGLAIHPPLLYLGYVGFSVCFSFAVAALLEGRLDAAWARWVRPWALMAWMFLTGGIAMGSYWAYYELGWGGWWFW
DPVENASLMPWLVGTALLHSAIVMEKRSALKIWTVLLAILTFSLSLLGTFLVRSGVLTSVHSFATDPGRGLFILGILALF
IGGSLSLFALRVQSLSAGGIFHPISREGALVFNNLFLTTAAATVLIGTLYPLLLEVTTGEKISVGAPFFNMTFGPLMVPL
LFAVPFGPLLAWKRGDLYGVGQRLMTAFALSLAVVGIMLWRTSAHSVLAALGIGLAAWLIFGSLTDLVLKAGIGKVSASK
AFARFKGLPRSVFGTSLAHIGLGLTLLGIVSVTTFGTENVLVMQPGGTAKVQNYTLRFEGLRPITGSNFTENRGAFTLLD
SSGRDLAVIEPSKRFFPARQMPTTESGIKTLWFSQVYVALGDEPGNGAVVVRIWWKPLVTLIWYGALVMMLGGLFSLADR
RLRVGAPSKVRRSASKEAEAVA

Specific function: Required for the biogenesis of c-type cytochromes. Possible subunit of a heme lyase [H]

COG id: COG1138

COG function: function code O; Cytochrome c biogenesis factor

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ccmF/cycK/ccl1/nrfE/ccsA family [H]

Homologues:

Organism=Escherichia coli, GI1788524, Length=648, Percent_Identity=44.5987654320988, Blast_Score=493, Evalue=1e-140,
Organism=Escherichia coli, GI1790511, Length=346, Percent_Identity=47.6878612716763, Blast_Score=265, Evalue=6e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002541
- InterPro:   IPR003567
- InterPro:   IPR003568 [H]

Pfam domain/function: PF01578 Cytochrom_C_asm [H]

EC number: NA

Molecular weight: Translated: 71349; Mature: 71218

Theoretical pI: Translated: 10.20; Mature: 10.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVEIGHFALVLALALSIVQSIVPVVGAHRRDAQLMAVAVPTALAVFALIVLASAALIHA
CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
YVVSDFSVLNVVENSHSQKPLLYKITGVWGNHEGSMLLWVFILTLFSALVAAFSGNLPET
HHHHCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
LRANVLAVQGWIGTAFLAFIIFTSNPFTRIFPAPMEGGDLNPVLQDIGLAIHPPLLYLGY
HHCCEEEEEHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCHHHHHCCCCCCCHHHHHHH
VGFSVCFSFAVAALLEGRLDAAWARWVRPWALMAWMFLTGGIAMGSYWAYYELGWGGWWF
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEEEEEECCCCEEE
WDPVENASLMPWLVGTALLHSAIVMEKRSALKIWTVLLAILTFSLSLLGTFLVRSGVLTS
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHSFATDPGRGLFILGILALFIGGSLSLFALRVQSLSAGGIFHPISREGALVFNNLFLTT
HHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHH
AAATVLIGTLYPLLLEVTTGEKISVGAPFFNMTFGPLMVPLLFAVPFGPLLAWKRGDLYG
HHHHHHHHHHHHHHEEECCCCEEEECCCHHHCCHHHHHHHHHHHCCCCHHHHCCCCCHHH
VGQRLMTAFALSLAVVGIMLWRTSAHSVLAALGIGLAAWLIFGSLTDLVLKAGIGKVSAS
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
KAFARFKGLPRSVFGTSLAHIGLGLTLLGIVSVTTFGTENVLVMQPGGTAKVQNYTLRFE
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEECCCCCCEEEEEEEEEC
GLRPITGSNFTENRGAFTLLDSSGRDLAVIEPSKRFFPARQMPTTESGIKTLWFSQVYVA
CCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCHHCCCCCCCCCCHHHHHHHHHHHEEEE
LGDEPGNGAVVVRIWWKPLVTLIWYGALVMMLGGLFSLADRRLRVGAPSKVRRSASKEAE
ECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHH
AVA
CCC
>Mature Secondary Structure 
SVEIGHFALVLALALSIVQSIVPVVGAHRRDAQLMAVAVPTALAVFALIVLASAALIHA
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHH
YVVSDFSVLNVVENSHSQKPLLYKITGVWGNHEGSMLLWVFILTLFSALVAAFSGNLPET
HHHHCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCHH
LRANVLAVQGWIGTAFLAFIIFTSNPFTRIFPAPMEGGDLNPVLQDIGLAIHPPLLYLGY
HHCCEEEEEHHHHHHHHHHHHHCCCCCCEECCCCCCCCCCCHHHHHCCCCCCCHHHHHHH
VGFSVCFSFAVAALLEGRLDAAWARWVRPWALMAWMFLTGGIAMGSYWAYYELGWGGWWF
HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCEEEEEEECCCCEEE
WDPVENASLMPWLVGTALLHSAIVMEKRSALKIWTVLLAILTFSLSLLGTFLVRSGVLTS
ECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VHSFATDPGRGLFILGILALFIGGSLSLFALRVQSLSAGGIFHPISREGALVFNNLFLTT
HHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEHHHHHHH
AAATVLIGTLYPLLLEVTTGEKISVGAPFFNMTFGPLMVPLLFAVPFGPLLAWKRGDLYG
HHHHHHHHHHHHHHEEECCCCEEEECCCHHHCCHHHHHHHHHHHCCCCHHHHCCCCCHHH
VGQRLMTAFALSLAVVGIMLWRTSAHSVLAALGIGLAAWLIFGSLTDLVLKAGIGKVSAS
HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
KAFARFKGLPRSVFGTSLAHIGLGLTLLGIVSVTTFGTENVLVMQPGGTAKVQNYTLRFE
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEECCCCCCEEEEEEEEEC
GLRPITGSNFTENRGAFTLLDSSGRDLAVIEPSKRFFPARQMPTTESGIKTLWFSQVYVA
CCCCCCCCCCCCCCCCEEEEECCCCEEEEECCCHHCCCCCCCCCCHHHHHHHHHHHEEEE
LGDEPGNGAVVVRIWWKPLVTLIWYGALVMMLGGLFSLADRRLRVGAPSKVRRSASKEAE
ECCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHH
AVA
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 7715602; 11481430 [H]