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The map label for this gene is sodB [H]

Identifier: 225852095

GI number: 225852095

Start: 581048

End: 581647

Strand: Direct

Name: sodB [H]

Synonym: BMEA_A0604

Alternate gene names: 225852095

Gene position: 581048-581647 (Clockwise)

Preceding gene: 225852093

Following gene: 225852098

Centisome position: 27.33

GC content: 54.17

Gene sequence:

>600_bases
ATGGCTTTCGAACTGCCCGCCCTTCCGTATGACTATGATGCGCTTGCGCCTTTCATGTCGCGCGAAACGCTTGAATATCA
TCACGACAAGCATCATCAGGCCTATGTCACCAACGGTAACAAGCTTCTCGAAGGTTCCGGCCTGGAAGGCAAGAGCCTCG
AAGAAATCGTCAAGGAAAGCTTCGGCAAGAATCAGGCCCTCTTCAACAATGCCGGCCAGCACTACAACCATATCCTTTTC
TGGAAATGGATGAAGAAGGATGGCGGCGGCAAGAAACTGCCGGGCAAGCTGGAAAAGGCCTTTGATTCCGATCTTGGCGG
TTATGACAAGTTCCGCGCTGATTTCATCGCTGCCGGTGCCGGCCAGTTCGGTTCGGGCTGGGCCTGGCTTTCCGTCAAGG
ACGGCAAGCTTGAAATTTCCAAGACCCCGAACGGTGAAAACCCGCTCGTGCACGGTGCGGCGCCGATCCTCGGCGTGGAT
GTGTGGGAACACTCCTATTACATCGATTACCGCAACGCGCGTCCGAAATATCTCGAAGCTTTCGTCGATAGCCTCGTGAA
CTGGGATTACGTGCTGGAAATGTACGAAAAGGCGGCATAA

Upstream 100 bases:

>100_bases
TGCGGCTTATGTAGATTGCGCACGCAAGTTTTGCTCTTGCATCCGGGCATCATCTATTTGCTTTGCCCGCCGCAAGCTTA
AAGAAAAGAGGAGAGTTTCC

Downstream 100 bases:

>100_bases
GCCTGCCGATTGTTTGAAAAGCGCCTGCTCTCAGGGGCTTATATATTGAGGCCGGGCATCGGTTATGATGCTCCGGCCTC
ATTTATTATCAGGGTCTTGC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 198

Protein sequence:

>199_residues
MAFELPALPYDYDALAPFMSRETLEYHHDKHHQAYVTNGNKLLEGSGLEGKSLEEIVKESFGKNQALFNNAGQHYNHILF
WKWMKKDGGGKKLPGKLEKAFDSDLGGYDKFRADFIAAGAGQFGSGWAWLSVKDGKLEISKTPNGENPLVHGAAPILGVD
VWEHSYYIDYRNARPKYLEAFVDSLVNWDYVLEMYEKAA

Sequences:

>Translated_199_residues
MAFELPALPYDYDALAPFMSRETLEYHHDKHHQAYVTNGNKLLEGSGLEGKSLEEIVKESFGKNQALFNNAGQHYNHILF
WKWMKKDGGGKKLPGKLEKAFDSDLGGYDKFRADFIAAGAGQFGSGWAWLSVKDGKLEISKTPNGENPLVHGAAPILGVD
VWEHSYYIDYRNARPKYLEAFVDSLVNWDYVLEMYEKAA
>Mature_198_residues
AFELPALPYDYDALAPFMSRETLEYHHDKHHQAYVTNGNKLLEGSGLEGKSLEEIVKESFGKNQALFNNAGQHYNHILFW
KWMKKDGGGKKLPGKLEKAFDSDLGGYDKFRADFIAAGAGQFGSGWAWLSVKDGKLEISKTPNGENPLVHGAAPILGVDV
WEHSYYIDYRNARPKYLEAFVDSLVNWDYVLEMYEKAA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=195, Percent_Identity=41.5384615384615, Blast_Score=144, Evalue=5e-35,
Organism=Homo sapiens, GI67782305, Length=195, Percent_Identity=41.5384615384615, Blast_Score=144, Evalue=5e-35,
Organism=Homo sapiens, GI67782309, Length=195, Percent_Identity=36.4102564102564, Blast_Score=118, Evalue=3e-27,
Organism=Escherichia coli, GI1787946, Length=192, Percent_Identity=53.6458333333333, Blast_Score=204, Evalue=5e-54,
Organism=Escherichia coli, GI1790342, Length=200, Percent_Identity=45.5, Blast_Score=170, Evalue=5e-44,
Organism=Caenorhabditis elegans, GI17506561, Length=197, Percent_Identity=39.5939086294416, Blast_Score=135, Evalue=2e-32,
Organism=Caenorhabditis elegans, GI17569479, Length=197, Percent_Identity=38.0710659898477, Blast_Score=124, Evalue=2e-29,
Organism=Saccharomyces cerevisiae, GI6321796, Length=198, Percent_Identity=34.8484848484849, Blast_Score=97, Evalue=2e-21,
Organism=Drosophila melanogaster, GI17136812, Length=199, Percent_Identity=40.2010050251256, Blast_Score=136, Evalue=1e-32,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22482; Mature: 22351

Theoretical pI: Translated: 6.09; Mature: 6.09

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFELPALPYDYDALAPFMSRETLEYHHDKHHQAYVTNGNKLLEGSGLEGKSLEEIVKES
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEECCCCCCCHHHHHHHHH
FGKNQALFNNAGQHYNHILFWKWMKKDGGGKKLPGKLEKAFDSDLGGYDKFRADFIAAGA
CCCCHHHHHCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCC
GQFGSGWAWLSVKDGKLEISKTPNGENPLVHGAAPILGVDVWEHSYYIDYRNARPKYLEA
CCCCCCEEEEEEECCEEEEEECCCCCCCEEECCCCEEEEEEECCEEEEEECCCCHHHHHH
FVDSLVNWDYVLEMYEKAA
HHHHHHCHHHHHHHHHHCC
>Mature Secondary Structure 
AFELPALPYDYDALAPFMSRETLEYHHDKHHQAYVTNGNKLLEGSGLEGKSLEEIVKES
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEECCCCCCCHHHHHHHHH
FGKNQALFNNAGQHYNHILFWKWMKKDGGGKKLPGKLEKAFDSDLGGYDKFRADFIAAGA
CCCCHHHHHCCCCCCCEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHCCCC
GQFGSGWAWLSVKDGKLEISKTPNGENPLVHGAAPILGVDVWEHSYYIDYRNARPKYLEA
CCCCCCEEEEEEECCEEEEEECCCCCCCEEECCCCEEEEEEECCEEEEEECCCCHHHHHH
FVDSLVNWDYVLEMYEKAA
HHHHHHCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10419947; 11481430 [H]