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The map label for this gene is ygaU [C]

Identifier: 225851977

GI number: 225851977

Start: 460713

End: 461927

Strand: Direct

Name: ygaU [C]

Synonym: BMEA_A0474

Alternate gene names: 225851977

Gene position: 460713-461927 (Clockwise)

Preceding gene: 225851976

Following gene: 225851978

Centisome position: 21.67

GC content: 61.89

Gene sequence:

>1215_bases
ATGCAGAAGTACTGGTCCTGGTTGCTTGGTGTCGGGCTCGTTGTCATTGCCGGCGGGCTTGCTTTCTATTGGAATTCCCT
GACCCGGACGGCGGATGCGCCGAAGGTGGACAATGCCTCCATCGCTTCGCCGGTAACGCCCGGACCCGCAAAGGAAAAGC
CCGCACAAGCGCAACAAACTCCCGCCACGGCAATGCCTGCCACCGCGAAGGCCGTGGATGTGCCGGTGTTTGATGTTCTG
CGCGTCGAGGCGGATGGCTCGGTCGTCATTGCTGGTCAGGCGGCACCCAATTCCGCGGTAGATGTGGTGGCGGGTGCTGA
GGTGGTGGGTCAGGCCAGGGCGGGCGCCAATGGCGATTTTGCAGTGGTGCTGGATCGCGCATTGTCGCCGGGTGATCATC
AGCTTGTCCTGCGCGCCACAAGCTCCGACAAGCATGTTGCAACCTCGGCGCAGACGGCCATCGTATCCGTTCCCGCAACT
GCCGATGGACCGGTTCTGGCTCTGGTGGAAGAGCCGGGACAGGCGAGCCGCCTCATCACCAAGCCAAAAACGGCCCCTGA
GGGCAGTGCCGCTGGCGCGCCCTCGGGTGGAGAGATGCAGGCCGGCGCCGCAGGCGAAACGGAACAGGCAAAGCCGAATG
CCGACCGCCCGATCGCCATCGAGGCGGTGGAAATCGAAGGCTCGTCGGTCTTTGTCGCGGGCAAGGCAAAGGATGGTGCG
CGCGTTATCGTACATGCCAATGACGTGCTTCTTGGCACAAGCGCGATTTCACCCGAAGGCCGCTTTCTGGTGCAAGGCGA
GAGGCCGCTCGCCATCGGCGACTATATTATCCGTGCCGATCTTCTGGATGGCACAAACCGCATCCTTGCCACTGCGCGTG
TACCGTTCCGCCGCGAGGCCGGTGAAAATATTTCGGCCGTTGCGCCTGCGGCCAATCAGCAGGCAGGCAGCGCAAACACG
CAAGCCGATGGCGCGCAAGATACGGCTGCGCTGCAAAAAGTGGACGGCTCCGTCATCATCCGGCGCGGTGACAATCTCTG
GACCATATCGAAGCGCACTTATGGCGAAGGCACGCGCTACACGACCATTTATCTTGCCAATCGCGATCAGATCCGCAATC
CCGACCTGATCTGGCCGGGACAGGTTTTCGTGATGCCCAAGGAGCCGCTGCGCGACAATGAGGTGAAGCGCAAGCTTCTG
GAAAAGAACCCCTGA

Upstream 100 bases:

>100_bases
AACCCGATCAAAAGGTGTGAATGCGGCGAAAACAAAAAGAATGCGGTTCCGGGCTGAGAGCAGTGCCGGGCCCGTCTTTG
GGGGCGGAATTCGGAACGAG

Downstream 100 bases:

>100_bases
TTTATTGCGAGGGAGGCGTTGCGGTTTCGAGGCTTGTCTCCCATAAATGCAGATCGCCTTTGCGGGCAAATCACTTTGCC
AGACTGGGTTCCGGTCCCGC

Product: peptidoglycan-binding LysM

Products: NA

Alternate protein names: LysM Domain-Containing Protein

Number of amino acids: Translated: 404; Mature: 404

Protein sequence:

>404_residues
MQKYWSWLLGVGLVVIAGGLAFYWNSLTRTADAPKVDNASIASPVTPGPAKEKPAQAQQTPATAMPATAKAVDVPVFDVL
RVEADGSVVIAGQAAPNSAVDVVAGAEVVGQARAGANGDFAVVLDRALSPGDHQLVLRATSSDKHVATSAQTAIVSVPAT
ADGPVLALVEEPGQASRLITKPKTAPEGSAAGAPSGGEMQAGAAGETEQAKPNADRPIAIEAVEIEGSSVFVAGKAKDGA
RVIVHANDVLLGTSAISPEGRFLVQGERPLAIGDYIIRADLLDGTNRILATARVPFRREAGENISAVAPAANQQAGSANT
QADGAQDTAALQKVDGSVIIRRGDNLWTISKRTYGEGTRYTTIYLANRDQIRNPDLIWPGQVFVMPKEPLRDNEVKRKLL
EKNP

Sequences:

>Translated_404_residues
MQKYWSWLLGVGLVVIAGGLAFYWNSLTRTADAPKVDNASIASPVTPGPAKEKPAQAQQTPATAMPATAKAVDVPVFDVL
RVEADGSVVIAGQAAPNSAVDVVAGAEVVGQARAGANGDFAVVLDRALSPGDHQLVLRATSSDKHVATSAQTAIVSVPAT
ADGPVLALVEEPGQASRLITKPKTAPEGSAAGAPSGGEMQAGAAGETEQAKPNADRPIAIEAVEIEGSSVFVAGKAKDGA
RVIVHANDVLLGTSAISPEGRFLVQGERPLAIGDYIIRADLLDGTNRILATARVPFRREAGENISAVAPAANQQAGSANT
QADGAQDTAALQKVDGSVIIRRGDNLWTISKRTYGEGTRYTTIYLANRDQIRNPDLIWPGQVFVMPKEPLRDNEVKRKLL
EKNP
>Mature_404_residues
MQKYWSWLLGVGLVVIAGGLAFYWNSLTRTADAPKVDNASIASPVTPGPAKEKPAQAQQTPATAMPATAKAVDVPVFDVL
RVEADGSVVIAGQAAPNSAVDVVAGAEVVGQARAGANGDFAVVLDRALSPGDHQLVLRATSSDKHVATSAQTAIVSVPAT
ADGPVLALVEEPGQASRLITKPKTAPEGSAAGAPSGGEMQAGAAGETEQAKPNADRPIAIEAVEIEGSSVFVAGKAKDGA
RVIVHANDVLLGTSAISPEGRFLVQGERPLAIGDYIIRADLLDGTNRILATARVPFRREAGENISAVAPAANQQAGSANT
QADGAQDTAALQKVDGSVIIRRGDNLWTISKRTYGEGTRYTTIYLANRDQIRNPDLIWPGQVFVMPKEPLRDNEVKRKLL
EKNP

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 42063; Mature: 42063

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKYWSWLLGVGLVVIAGGLAFYWNSLTRTADAPKVDNASIASPVTPGPAKEKPAQAQQT
CCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCC
PATAMPATAKAVDVPVFDVLRVEADGSVVIAGQAAPNSAVDVVAGAEVVGQARAGANGDF
CCCCCCCCCCEECCCEEEEEEEECCCCEEEEECCCCCCCEEEEECHHHHHHHCCCCCCCE
AVVLDRALSPGDHQLVLRATSSDKHVATSAQTAIVSVPATADGPVLALVEEPGQASRLIT
EEEEECCCCCCCCEEEEEECCCCCEEECCCCEEEEECCCCCCCCEEEEEECCCCCCEEEE
KPKTAPEGSAAGAPSGGEMQAGAAGETEQAKPNADRPIAIEAVEIEGSSVFVAGKAKDGA
CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCC
RVIVHANDVLLGTSAISPEGRFLVQGERPLAIGDYIIRADLLDGTNRILATARVPFRREA
EEEEEECCEEEECCCCCCCCCEEEECCCCEEECCEEEEEEECCCCCEEEEEECCCHHHHC
GENISAVAPAANQQAGSANTQADGAQDTAALQKVDGSVIIRRGDNLWTISKRTYGEGTRY
CCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCEEEEECEECCCCCEE
TTIYLANRDQIRNPDLIWPGQVFVMPKEPLRDNEVKRKLLEKNP
EEEEEECCCCCCCCCEECCCEEEEECCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MQKYWSWLLGVGLVVIAGGLAFYWNSLTRTADAPKVDNASIASPVTPGPAKEKPAQAQQT
CCHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCC
PATAMPATAKAVDVPVFDVLRVEADGSVVIAGQAAPNSAVDVVAGAEVVGQARAGANGDF
CCCCCCCCCCEECCCEEEEEEEECCCCEEEEECCCCCCCEEEEECHHHHHHHCCCCCCCE
AVVLDRALSPGDHQLVLRATSSDKHVATSAQTAIVSVPATADGPVLALVEEPGQASRLIT
EEEEECCCCCCCCEEEEEECCCCCEEECCCCEEEEECCCCCCCCEEEEEECCCCCCEEEE
KPKTAPEGSAAGAPSGGEMQAGAAGETEQAKPNADRPIAIEAVEIEGSSVFVAGKAKDGA
CCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCC
RVIVHANDVLLGTSAISPEGRFLVQGERPLAIGDYIIRADLLDGTNRILATARVPFRREA
EEEEEECCEEEECCCCCCCCCEEEECCCCEEECCEEEEEEECCCCCEEEEEECCCHHHHC
GENISAVAPAANQQAGSANTQADGAQDTAALQKVDGSVIIRRGDNLWTISKRTYGEGTRY
CCCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCEEEEECEECCCCCEE
TTIYLANRDQIRNPDLIWPGQVFVMPKEPLRDNEVKRKLLEKNP
EEEEEECCCCCCCCCEECCCEEEEECCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA