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The map label for this gene is yciR [C]

Identifier: 225851746

GI number: 225851746

Start: 228399

End: 230510

Strand: Direct

Name: yciR [C]

Synonym: BMEA_A0227

Alternate gene names: 225851746

Gene position: 228399-230510 (Clockwise)

Preceding gene: 225851738

Following gene: 225851747

Centisome position: 10.74

GC content: 57.86

Gene sequence:

>2112_bases
ATGAGGAAGCGGAAGGGCGCTCCGGCGGAAGGCACGATGGCGTGCACGTCCGAACAGGACTTCCGTATCCTGTTTACGAC
GCATCCCACGCCAATGTGGGTTTATGATCCCGAGACGCTGCGTTTCATCGTCATGAATGACGCTGCATATGAACTCTACG
GTTACACTGCCGATGAAATTCCCGGCATGACGGTGCTCGATATCCGGCCTCAGTCCGAACGCGACAGGATGCTGTCTGCC
ATTCGTGACCGCAGCGATCTCGAACGGCCCGAGCGCTGGCAGCATCTGCGCGCCAATGGCGAGATTATCGATGTTCTCAC
TTACGGGCGCCAGGTGGTGTTCGATGGCAGGGAAGCGATTCTGGCTATTGTCCAGGATCGAACCGAACTGGCGGAAGCCA
ATCGTCAGGCAAGCCACGCCCAGACCTTGCTGGATAGTCTCGTCACCAACCTGCCGGTCGGGGTTTTCGTCAAGGACATG
CACGACGATGGCCGTTATGTGCTCTATAATCAGGCGGCATCGACAGCGAGCGGACAGCCGATAGACGAAGCCATCGGTTC
GATTGATCTTGATATTTTTCCGGAGCGCGAGGCGGCTGTTTTCGCCCAGCATGACCGCATGGTGATGCGCCGCCGCGAGG
TGTTGAGCGTCGAACGCAAGGTCGAGCGCAAGGACGGAACGTCCCGCACGATGCGGATCATCAAATCTTCGATACCGCCG
GTCGAAGGCAATGAGCCGCGCTATCTGATCGGACTTGTCGAGGATATAACCGAACGGCGCGAGATAGAAAAACGCATGGT
CCATATCGCCATGCATGACAGCCTGACCGGCCTGCCCAATCGCGCCTATTTCACCCACCATGTCGGGAGCCTGTTGAAGA
AGGGCAGCGATTGCGACCCCTTCGCCCTGTTCTATCTGGATATCGACCATTTCAAGAACGTCAATGACAGTATCAGCCAT
CAGGCGGGCGACCAGCTTTTACAGGAAGTAGCGCTTCGGCTGCGACAGATCACAACGGCGGACCAGTTCATTGCGCGCCT
TGGCGGCGACGAGTTTGCCATTGTCTATCGAAGCGGTACGCTGGCGCAGATCGCCATGTTTGCCGATCGCGTGCTTTCGG
CCTTTCAGGATCCGTTCGTGCTGGGCGGCAATGCGGAATTCGTCACTTGCAGCATGGGAATAGCGCAGGCTCCCCTGCAT
GGCGACAATCCCGATGTACTCATGCGCAATGCCGATCTGGCGCTCTATGCGTCGAAATCGGGCGGGCGGCGAACCTTCCG
CTTCTATCAGGATTCATTGCGCCTTGCTGCCGAAAAGCGCCATGTCATGACTTCGGATTTGCGCCAGGCACTCGCTGCCG
GCCAGTTTCAGCTTCATTATCAGCCGATCTTCAATCTCGAAGGCGGGCATATTTCTGGTTTCGAGGCGCTCATCCGCTGG
AACCATCCCGAACACGGCATGATCCCGCCCTTGGAATTCATCAGTGTTGCCGAGGAAACCGGGCTGATCGGCCCTATCGG
TGATTGGGTCTTGCAGGAAGCCTGCCGTGAGGCTGCACGCTGGCCGGAAGACATCAAGGTCTCGGTCAATCTGTCGCCGG
TCCAGTTCGACCAGAGCACGCTTCTCCAATCCGTCACCGACGCGCTGGGCGCCGCGCACCTCGCGCCCGAACGTCTGGAA
CTGGAAATTACCGAAACAGTATTTTTGTCCAACAGCAAGCACAATATCGAGCTTCTTTTTGACCTGCGCCGCCTTGGCGT
GCGCATCGCCATGGACGATTTCGGCACCGGCTATTCGTCGCTGAGCTATCTGCGCGCGTTCCCCTTCGACAAGATCAAGA
TCGACCGTAGCTTCGTTTCCGGCATTGAGGTCGATACGCGCGATCTCGCCATTATTCAGGCGGTGGCGACGCTTGGCGCA
GGTTTCAATATTGTGACGACTGCCGAGGGCGTTGAAACCGCCCAGCAGCTTGAACGGCTGAAAAACGAACGTTTCGGTGA
AGTGCAGGGCTATTTCACCGGGCGGCCAATGCGTGCTGGCGATGTGCACGCCTTCATCCGGAACAGCGGCGGCCTTGGCA
TGGCTCGCCCGCATAATACACTTGCTATCTGA

Upstream 100 bases:

>100_bases
CATCTTCCGCGTGTTACTCATGGTGCTATTGAACGAGATGATCCGCTTCATGAGATGGATCGGTATTATCCTGTAGGATC
AGTTGGATGAGGGGTTTGCA

Downstream 100 bases:

>100_bases
CCATCATACTGAAGGGGCTTGACCTTCCAACGGTTGGAAGGGCTAACACGGGGGCACTCTCGGTTTTCGACGATTTATAT
GTCACGAAAGGGATTGCCAT

Product: diguanylate cyclase GGDEF domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 703; Mature: 703

Protein sequence:

>703_residues
MRKRKGAPAEGTMACTSEQDFRILFTTHPTPMWVYDPETLRFIVMNDAAYELYGYTADEIPGMTVLDIRPQSERDRMLSA
IRDRSDLERPERWQHLRANGEIIDVLTYGRQVVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDM
HDDGRYVLYNQAASTASGQPIDEAIGSIDLDIFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTSRTMRIIKSSIPP
VEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHVGSLLKKGSDCDPFALFYLDIDHFKNVNDSISH
QAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLH
GDNPDVLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFNLEGGHISGFEALIRW
NHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPEDIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLE
LEITETVFLSNSKHNIELLFDLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA
GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRNSGGLGMARPHNTLAI

Sequences:

>Translated_703_residues
MRKRKGAPAEGTMACTSEQDFRILFTTHPTPMWVYDPETLRFIVMNDAAYELYGYTADEIPGMTVLDIRPQSERDRMLSA
IRDRSDLERPERWQHLRANGEIIDVLTYGRQVVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDM
HDDGRYVLYNQAASTASGQPIDEAIGSIDLDIFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTSRTMRIIKSSIPP
VEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHVGSLLKKGSDCDPFALFYLDIDHFKNVNDSISH
QAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLH
GDNPDVLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFNLEGGHISGFEALIRW
NHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPEDIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLE
LEITETVFLSNSKHNIELLFDLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA
GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRNSGGLGMARPHNTLAI
>Mature_703_residues
MRKRKGAPAEGTMACTSEQDFRILFTTHPTPMWVYDPETLRFIVMNDAAYELYGYTADEIPGMTVLDIRPQSERDRMLSA
IRDRSDLERPERWQHLRANGEIIDVLTYGRQVVFDGREAILAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDM
HDDGRYVLYNQAASTASGQPIDEAIGSIDLDIFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTSRTMRIIKSSIPP
VEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHVGSLLKKGSDCDPFALFYLDIDHFKNVNDSISH
QAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGTLAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLH
GDNPDVLMRNADLALYASKSGGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFNLEGGHISGFEALIRW
NHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPEDIKVSVNLSPVQFDQSTLLQSVTDALGAAHLAPERLE
LEITETVFLSNSKHNIELLFDLRRLGVRIAMDDFGTGYSSLSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGA
GFNIVTTAEGVETAQQLERLKNERFGEVQGYFTGRPMRAGDVHAFIRNSGGLGMARPHNTLAI

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=549, Percent_Identity=32.2404371584699, Blast_Score=305, Evalue=5e-84,
Organism=Escherichia coli, GI87081921, Length=687, Percent_Identity=29.4032023289665, Blast_Score=269, Evalue=4e-73,
Organism=Escherichia coli, GI226510982, Length=422, Percent_Identity=27.4881516587678, Blast_Score=163, Evalue=3e-41,
Organism=Escherichia coli, GI1788502, Length=267, Percent_Identity=34.8314606741573, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI87081980, Length=257, Percent_Identity=34.2412451361868, Blast_Score=142, Evalue=9e-35,
Organism=Escherichia coli, GI87081845, Length=244, Percent_Identity=34.4262295081967, Blast_Score=135, Evalue=9e-33,
Organism=Escherichia coli, GI1790496, Length=234, Percent_Identity=32.9059829059829, Blast_Score=131, Evalue=2e-31,
Organism=Escherichia coli, GI1787055, Length=289, Percent_Identity=31.8339100346021, Blast_Score=126, Evalue=5e-30,
Organism=Escherichia coli, GI1788381, Length=533, Percent_Identity=25.328330206379, Blast_Score=123, Evalue=5e-29,
Organism=Escherichia coli, GI87081743, Length=239, Percent_Identity=32.2175732217573, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1786507, Length=276, Percent_Identity=28.2608695652174, Blast_Score=120, Evalue=4e-28,
Organism=Escherichia coli, GI87082096, Length=249, Percent_Identity=32.9317269076305, Blast_Score=112, Evalue=9e-26,
Organism=Escherichia coli, GI1788849, Length=264, Percent_Identity=31.4393939393939, Blast_Score=107, Evalue=3e-24,
Organism=Escherichia coli, GI87081881, Length=417, Percent_Identity=23.021582733813, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1788956, Length=157, Percent_Identity=34.3949044585987, Blast_Score=83, Evalue=6e-17,
Organism=Escherichia coli, GI87081977, Length=172, Percent_Identity=28.4883720930233, Blast_Score=81, Evalue=3e-16,
Organism=Escherichia coli, GI145693134, Length=167, Percent_Identity=29.940119760479, Blast_Score=80, Evalue=6e-16,
Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=31.6770186335404, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI87082007, Length=158, Percent_Identity=31.0126582278481, Blast_Score=76, Evalue=8e-15,
Organism=Escherichia coli, GI1786584, Length=191, Percent_Identity=32.9842931937173, Blast_Score=75, Evalue=2e-14,
Organism=Escherichia coli, GI1788085, Length=177, Percent_Identity=29.3785310734463, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1787802, Length=128, Percent_Identity=31.25, Blast_Score=68, Evalue=2e-12,
Organism=Escherichia coli, GI1787056, Length=161, Percent_Identity=32.9192546583851, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787410, Length=177, Percent_Identity=26.5536723163842, Blast_Score=66, Evalue=7e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 78819; Mature: 78819

Theoretical pI: Translated: 5.61; Mature: 5.61

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKRKGAPAEGTMACTSEQDFRILFTTHPTPMWVYDPETLRFIVMNDAAYELYGYTADEI
CCCCCCCCCCCCEEECCCCCEEEEEEECCCEEEEECCCEEEEEEEECCEEEEECCCHHHC
PGMTVLDIRPQSERDRMLSAIRDRSDLERPERWQHLRANGEIIDVLTYGRQVVFDGREAI
CCEEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEECCCEEEECCHHHH
LAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQAASTASGQP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCCCCCCC
IDEAIGSIDLDIFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTSRTMRIIKSSIPP
HHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
VEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHVGSLLKKGSDCDP
CCCCCCEEEEEHHHHHHHHHHHHHHHEEHEECCCCCCCCCCCHHHHHHHHHHHCCCCCCC
FALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGT
EEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKS
HHHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCEECCCCCCCCCEEEECCCEEEEECCC
GGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFNLEGGHISGFEALIRW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCHHHEEC
NHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPEDIKVSVNLSPVQFDQST
CCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCEECCHHH
LLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLFDLRRLGVRIAMDDFGTGYSS
HHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCEEEEEEHHHCCEEEEECCCCCCHHH
LSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGAGFNIVTTAEGVETAQQLERL
HHHHHHCCCCCEEECHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHH
KNERFGEVQGYFTGRPMRAGDVHAFIRNSGGLGMARPHNTLAI
HHCCCCCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRKRKGAPAEGTMACTSEQDFRILFTTHPTPMWVYDPETLRFIVMNDAAYELYGYTADEI
CCCCCCCCCCCCEEECCCCCEEEEEEECCCEEEEECCCEEEEEEEECCEEEEECCCHHHC
PGMTVLDIRPQSERDRMLSAIRDRSDLERPERWQHLRANGEIIDVLTYGRQVVFDGREAI
CCEEEEEECCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCEEEEEECCCEEEECCHHHH
LAIVQDRTELAEANRQASHAQTLLDSLVTNLPVGVFVKDMHDDGRYVLYNQAASTASGQP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEECCCCCCCCCC
IDEAIGSIDLDIFPEREAAVFAQHDRMVMRRREVLSVERKVERKDGTSRTMRIIKSSIPP
HHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCC
VEGNEPRYLIGLVEDITERREIEKRMVHIAMHDSLTGLPNRAYFTHHVGSLLKKGSDCDP
CCCCCCEEEEEHHHHHHHHHHHHHHHEEHEECCCCCCCCCCCHHHHHHHHHHHCCCCCCC
FALFYLDIDHFKNVNDSISHQAGDQLLQEVALRLRQITTADQFIARLGGDEFAIVYRSGT
EEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCC
LAQIAMFADRVLSAFQDPFVLGGNAEFVTCSMGIAQAPLHGDNPDVLMRNADLALYASKS
HHHHHHHHHHHHHHHCCCEEECCCCCEEEEECCCEECCCCCCCCCEEEECCCEEEEECCC
GGRRTFRFYQDSLRLAAEKRHVMTSDLRQALAAGQFQLHYQPIFNLEGGHISGFEALIRW
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCCCCHHHEEC
NHPEHGMIPPLEFISVAEETGLIGPIGDWVLQEACREAARWPEDIKVSVNLSPVQFDQST
CCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCEECCHHH
LLQSVTDALGAAHLAPERLELEITETVFLSNSKHNIELLFDLRRLGVRIAMDDFGTGYSS
HHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCEEEEEEHHHCCEEEEECCCCCCHHH
LSYLRAFPFDKIKIDRSFVSGIEVDTRDLAIIQAVATLGAGFNIVTTAEGVETAQQLERL
HHHHHHCCCCCEEECHHHHCCCCCCCHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHH
KNERFGEVQGYFTGRPMRAGDVHAFIRNSGGLGMARPHNTLAI
HHCCCCCCCEEECCCCCCCCCCEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]