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The map label for this gene is ubiD [H]

Identifier: 225631014

GI number: 225631014

Start: 1429298

End: 1430776

Strand: Direct

Name: ubiD [H]

Synonym: WRi_013420

Alternate gene names: 225631014

Gene position: 1429298-1430776 (Clockwise)

Preceding gene: 225631013

Following gene: 225631015

Centisome position: 98.85

GC content: 40.3

Gene sequence:

>1479_bases
ATGTACAACAACTTACGTGACTTCATCAAAGCCTTAGAAGAAAAAAAAGATCTGATTAGGATTAAGGAGGAAGTTTCAAT
AGTTCTTGAAATGACAGAAATTCACCGTAGGGTTTTGTCAAACAAAGGGCCAGCTATCATCTTTGAAAATGTTGTCACAG
AAAACGGCAAAAATTCGATTCCAGTTTTAGTGAATTTATTCGGTACTATTGAAAGAATTGCCTTGGGACTGAACATAAAT
CCTGGTGAGCTAAGAGATCTTGGTAAACTTTTAGCATTTTTGCAATCACCTGAGCCGCCAAAAAACTTTAAAGATGCTAT
GAAGATGTTTCCTCTGCTAAAAGTCGTGTTATCGATGCGAAGTAAAGTCGTGAGCAAAGCTCCATGTCAAGAGGTAGTGC
TAACCGGAGATGAAGTGGACCTAAGTCTACTGCCCATTCAAATATGCTGGCCAAATGAACCTGCACCACTTATCACCTGG
CCGATTGTGGTGACAAAAGGACCTACGAAAGACAAACAAGATAATTTCAATCTTGGAATATATCGTATGCAGGTCATAGA
TAAAAAAACAACTCTAATGCGTTGGCTTGCGCATCGTGGAGGAGCAGGTCACCATAAACGATGGAAAGAGAAGGAACAAA
ATATGAAATTTCCTGCTGCTGCTGTGATCGGTAGTGATCCTGCAACGATTATTGCTGCAGTAACTCCAGTGCCAGAAACA
TTGTCAGAATACCAATTTGCTGGACTGCTGCGAAAGAAGCCGCTTGAGCTGGTAAATTGTAAGACTATTCCACTTCAAGT
ACCAGCTCACGCGGAAATCGTTCTGGAAGGCTATGTGAGTTTGGATAGATATCAAGACGAAGGGCCATACGGAGATCACA
CCGGCTACTATAATTCTGTTGAGCAATTTCCTGAATTTAATATTACTGCAATTACTATGCGTAAAAACCCGATATATCTT
AGCACTTTCACTGGCAAGCCACCTGATGAACCATCGATTCTTGGTGAAGCACTCAATGAAATTTTTGTGCCCATTCTTAT
CAATCAATTTCCAGAGATAGTGGACTTTTATCTGCCACCGGAAGGTTGCTCATATAGAATAGCGGTAGTGTCGATAAAAA
AATCCTATCCAGGGCAGGCAAAAAGAATTGTTATGGGCATACTTTCCTTTCTAAAGCAATTTTTATACACGAAGTTTATT
ATCGTTGTTGATGATGATATAAATATACGTGATTGGAAGGAAGTGATGTGGGCAATGTCAACAAGGATGGACCCTGTGCG
TGATACAATCATGATAGAAAATGCACCTATTGATTATTTAGACTTTGCTTCCCCTGAAAGTGGACTTGGAGGTAAGATGG
GATTTGATGCGACAAATAAAATCCCGCCTGAAACCAAACGAGAGTGGGGAAAGAAAATTGAGATGAGTGAGGAAATAGTA
AGGAAAGTCGCGGAGAAGTGGGAGGAATATATGGACTAG

Upstream 100 bases:

>100_bases
ATTAACTGAAAGCTCGCTAGGCAGGAAAGTAGTGCATAGGTCAAATTTCAATAAAGTGCTTGAAAACTAAATGTAAACTT
AAAATTTTAAAAACTGGAAT

Downstream 100 bases:

>100_bases
ACTTCTTGCATAAAAGCAGAAAAAAGTTTGGCGTTTTTTATAATGCCGCATTAACTGATAATTGTGCGTCACAGTGCCCT
TTTTTTGTCATCCTATAGCT

Product: UbiD family decarboxylase

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase [H]

Number of amino acids: Translated: 492; Mature: 492

Protein sequence:

>492_residues
MYNNLRDFIKALEEKKDLIRIKEEVSIVLEMTEIHRRVLSNKGPAIIFENVVTENGKNSIPVLVNLFGTIERIALGLNIN
PGELRDLGKLLAFLQSPEPPKNFKDAMKMFPLLKVVLSMRSKVVSKAPCQEVVLTGDEVDLSLLPIQICWPNEPAPLITW
PIVVTKGPTKDKQDNFNLGIYRMQVIDKKTTLMRWLAHRGGAGHHKRWKEKEQNMKFPAAAVIGSDPATIIAAVTPVPET
LSEYQFAGLLRKKPLELVNCKTIPLQVPAHAEIVLEGYVSLDRYQDEGPYGDHTGYYNSVEQFPEFNITAITMRKNPIYL
STFTGKPPDEPSILGEALNEIFVPILINQFPEIVDFYLPPEGCSYRIAVVSIKKSYPGQAKRIVMGILSFLKQFLYTKFI
IVVDDDINIRDWKEVMWAMSTRMDPVRDTIMIENAPIDYLDFASPESGLGGKMGFDATNKIPPETKREWGKKIEMSEEIV
RKVAEKWEEYMD

Sequences:

>Translated_492_residues
MYNNLRDFIKALEEKKDLIRIKEEVSIVLEMTEIHRRVLSNKGPAIIFENVVTENGKNSIPVLVNLFGTIERIALGLNIN
PGELRDLGKLLAFLQSPEPPKNFKDAMKMFPLLKVVLSMRSKVVSKAPCQEVVLTGDEVDLSLLPIQICWPNEPAPLITW
PIVVTKGPTKDKQDNFNLGIYRMQVIDKKTTLMRWLAHRGGAGHHKRWKEKEQNMKFPAAAVIGSDPATIIAAVTPVPET
LSEYQFAGLLRKKPLELVNCKTIPLQVPAHAEIVLEGYVSLDRYQDEGPYGDHTGYYNSVEQFPEFNITAITMRKNPIYL
STFTGKPPDEPSILGEALNEIFVPILINQFPEIVDFYLPPEGCSYRIAVVSIKKSYPGQAKRIVMGILSFLKQFLYTKFI
IVVDDDINIRDWKEVMWAMSTRMDPVRDTIMIENAPIDYLDFASPESGLGGKMGFDATNKIPPETKREWGKKIEMSEEIV
RKVAEKWEEYMD
>Mature_492_residues
MYNNLRDFIKALEEKKDLIRIKEEVSIVLEMTEIHRRVLSNKGPAIIFENVVTENGKNSIPVLVNLFGTIERIALGLNIN
PGELRDLGKLLAFLQSPEPPKNFKDAMKMFPLLKVVLSMRSKVVSKAPCQEVVLTGDEVDLSLLPIQICWPNEPAPLITW
PIVVTKGPTKDKQDNFNLGIYRMQVIDKKTTLMRWLAHRGGAGHHKRWKEKEQNMKFPAAAVIGSDPATIIAAVTPVPET
LSEYQFAGLLRKKPLELVNCKTIPLQVPAHAEIVLEGYVSLDRYQDEGPYGDHTGYYNSVEQFPEFNITAITMRKNPIYL
STFTGKPPDEPSILGEALNEIFVPILINQFPEIVDFYLPPEGCSYRIAVVSIKKSYPGQAKRIVMGILSFLKQFLYTKFI
IVVDDDINIRDWKEVMWAMSTRMDPVRDTIMIENAPIDYLDFASPESGLGGKMGFDATNKIPPETKREWGKKIEMSEEIV
RKVAEKWEEYMD

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol [H]

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=489, Percent_Identity=57.4642126789366, Blast_Score=593, Evalue=1e-170,
Organism=Saccharomyces cerevisiae, GI6320748, Length=448, Percent_Identity=26.7857142857143, Blast_Score=124, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: 4.1.1.-

Molecular weight: Translated: 55869; Mature: 55869

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNNLRDFIKALEEKKDLIRIKEEVSIVLEMTEIHRRVLSNKGPAIIFENVVTENGKNSI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCC
PVLVNLFGTIERIALGLNINPGELRDLGKLLAFLQSPEPPKNFKDAMKMFPLLKVVLSMR
CHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
SKVVSKAPCQEVVLTGDEVDLSLLPIQICWPNEPAPLITWPIVVTKGPTKDKQDNFNLGI
HHHHHCCCCHHEEEECCCCCEEEEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCEEE
YRMQVIDKKTTLMRWLAHRGGAGHHKRWKEKEQNMKFPAAAVIGSDPATIIAAVTPVPET
EEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCHHH
LSEYQFAGLLRKKPLELVNCKTIPLQVPAHAEIVLEGYVSLDRYQDEGPYGDHTGYYNSV
HHHHHHHHHHHHCCHHHCCCEECEEECCCCCEEEEEHHHHHHCCCCCCCCCCCCCCHHHH
EQFPEFNITAITMRKNPIYLSTFTGKPPDEPSILGEALNEIFVPILINQFPEIVDFYLPP
HHCCCCCEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHEEECCC
EGCSYRIAVVSIKKSYPGQAKRIVMGILSFLKQFLYTKFIIVVDDDINIRDWKEVMWAMS
CCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHH
TRMDPVRDTIMIENAPIDYLDFASPESGLGGKMGFDATNKIPPETKREWGKKIEMSEEIV
HCCCCCCCEEEEECCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHH
RKVAEKWEEYMD
HHHHHHHHHHCC
>Mature Secondary Structure
MYNNLRDFIKALEEKKDLIRIKEEVSIVLEMTEIHRRVLSNKGPAIIFENVVTENGKNSI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCC
PVLVNLFGTIERIALGLNINPGELRDLGKLLAFLQSPEPPKNFKDAMKMFPLLKVVLSMR
CHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
SKVVSKAPCQEVVLTGDEVDLSLLPIQICWPNEPAPLITWPIVVTKGPTKDKQDNFNLGI
HHHHHCCCCHHEEEECCCCCEEEEEEEEECCCCCCCEEEEEEEEECCCCCCCCCCCCEEE
YRMQVIDKKTTLMRWLAHRGGAGHHKRWKEKEQNMKFPAAAVIGSDPATIIAAVTPVPET
EEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCEEEEECCCCCEEEEEECCCHHH
LSEYQFAGLLRKKPLELVNCKTIPLQVPAHAEIVLEGYVSLDRYQDEGPYGDHTGYYNSV
HHHHHHHHHHHHCCHHHCCCEECEEECCCCCEEEEEHHHHHHCCCCCCCCCCCCCCHHHH
EQFPEFNITAITMRKNPIYLSTFTGKPPDEPSILGEALNEIFVPILINQFPEIVDFYLPP
HHCCCCCEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHEEECCC
EGCSYRIAVVSIKKSYPGQAKRIVMGILSFLKQFLYTKFIIVVDDDINIRDWKEVMWAMS
CCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHH
TRMDPVRDTIMIENAPIDYLDFASPESGLGGKMGFDATNKIPPETKREWGKKIEMSEEIV
HCCCCCCCEEEEECCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHH
RKVAEKWEEYMD
HHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA