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The map label for this gene is ycfH [C]

Identifier: 225630971

GI number: 225630971

Start: 1381039

End: 1381806

Strand: Direct

Name: ycfH [C]

Synonym: WRi_012930

Alternate gene names: 225630971

Gene position: 1381039-1381806 (Clockwise)

Preceding gene: 225630970

Following gene: 225630979

Centisome position: 95.52

GC content: 36.2

Gene sequence:

>768_bases
ATGATAGTAGATTCTCATTGCCACTTGATTTATTTTTCTGACGATGAAATACCAAAAGTAATTTCAAGGGCAGAGCAAAA
TGGTGTAAAGGTTTTGCATAACATATGCGTAAGCATTGACGATGTTCCTAAGTTATTAAAAATTTCTTCATCCTATGATC
AGGTCTACTCCTCTGTTGGTATACATCCGCTTGATGCTGCTATAGAAAACGGTGAGTGTATACATGTTGATGAATTAGTT
GAATTTACCAAGAACCAAAAGGTAATTAGTATCGGTGAAACCGGGTTAGATTTTTATAAATCTGACAACAAAGACAATCA
GAAAAAAAGTTTTGCATTACATATAGAAGCGTCAAGAATAACTGGACTACCTTTAGTTATTCACACAAGAAGCGCTGATA
ATGAGATGATCGATATGTTAAGGTCAGAAATGAAAGCCGGTGCTTTTAGTGGAGTAATGCACTGCTTTGCTTCCTCTAAA
GAACTTGCTTATCAATCTATAGATTTGGGGTTATGTATTTCATTTTCTGGAATTATTACTTTTAAAAATGCGAGCTTACT
CAGAGAAATTGCACAAAATGTACCACGCGAGCGTGTTTTAGTCGAAACTGATGCACCATATCTATCACCTGAGCCTTATA
GGGGAAAAAAGAATGAACCAGCAATGGTGAAATACGTTGTTGATTGTTTGGCAGAGTTGTGGAATGAGTCACCAGAACAA
GTAGCGAAGGTAACCACAAGCAACTTTTTTAGGCTGTTTGAGCTATAA

Upstream 100 bases:

>100_bases
TAGATAGTTTAGTAGCCAGTGCTATATCATTTAAAAAAGAAGTTTATAAAACAGTGATAGAAGAGTTTTCTTCTATAATA
AAAGCCTCAACAATAAGCTC

Downstream 100 bases:

>100_bases
AGAAGCTCTATAAAACCATTAATTTGCTTATGAACCTAAAGATTTCACCAGCTCTCTCACCGAGTTTACAGACTTATTAA
ACATTTCTTGTTCACTATCA

Product: deoxyribonuclease, TatD family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MIVDSHCHLIYFSDDEIPKVISRAEQNGVKVLHNICVSIDDVPKLLKISSSYDQVYSSVGIHPLDAAIENGECIHVDELV
EFTKNQKVISIGETGLDFYKSDNKDNQKKSFALHIEASRITGLPLVIHTRSADNEMIDMLRSEMKAGAFSGVMHCFASSK
ELAYQSIDLGLCISFSGIITFKNASLLREIAQNVPRERVLVETDAPYLSPEPYRGKKNEPAMVKYVVDCLAELWNESPEQ
VAKVTTSNFFRLFEL

Sequences:

>Translated_255_residues
MIVDSHCHLIYFSDDEIPKVISRAEQNGVKVLHNICVSIDDVPKLLKISSSYDQVYSSVGIHPLDAAIENGECIHVDELV
EFTKNQKVISIGETGLDFYKSDNKDNQKKSFALHIEASRITGLPLVIHTRSADNEMIDMLRSEMKAGAFSGVMHCFASSK
ELAYQSIDLGLCISFSGIITFKNASLLREIAQNVPRERVLVETDAPYLSPEPYRGKKNEPAMVKYVVDCLAELWNESPEQ
VAKVTTSNFFRLFEL
>Mature_255_residues
MIVDSHCHLIYFSDDEIPKVISRAEQNGVKVLHNICVSIDDVPKLLKISSSYDQVYSSVGIHPLDAAIENGECIHVDELV
EFTKNQKVISIGETGLDFYKSDNKDNQKKSFALHIEASRITGLPLVIHTRSADNEMIDMLRSEMKAGAFSGVMHCFASSK
ELAYQSIDLGLCISFSGIITFKNASLLREIAQNVPRERVLVETDAPYLSPEPYRGKKNEPAMVKYVVDCLAELWNESPEQ
VAKVTTSNFFRLFEL

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI14042943, Length=267, Percent_Identity=28.4644194756554, Blast_Score=107, Evalue=7e-24,
Organism=Homo sapiens, GI225903439, Length=244, Percent_Identity=27.8688524590164, Blast_Score=99, Evalue=5e-21,
Organism=Homo sapiens, GI110349730, Length=266, Percent_Identity=25.9398496240602, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI226061853, Length=272, Percent_Identity=26.1029411764706, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI110349734, Length=266, Percent_Identity=26.3157894736842, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI226061614, Length=259, Percent_Identity=24.3243243243243, Blast_Score=78, Evalue=1e-14,
Organism=Homo sapiens, GI225903424, Length=164, Percent_Identity=29.2682926829268, Blast_Score=70, Evalue=1e-12,
Organism=Homo sapiens, GI226061595, Length=230, Percent_Identity=25.2173913043478, Blast_Score=70, Evalue=2e-12,
Organism=Escherichia coli, GI1787342, Length=260, Percent_Identity=39.2307692307692, Blast_Score=189, Evalue=2e-49,
Organism=Escherichia coli, GI87082439, Length=258, Percent_Identity=26.7441860465116, Blast_Score=115, Evalue=2e-27,
Organism=Escherichia coli, GI48994985, Length=243, Percent_Identity=26.7489711934156, Blast_Score=103, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI71980746, Length=265, Percent_Identity=26.0377358490566, Blast_Score=88, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI17559024, Length=278, Percent_Identity=26.6187050359712, Blast_Score=88, Evalue=4e-18,
Organism=Caenorhabditis elegans, GI17543026, Length=185, Percent_Identity=30.2702702702703, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24648690, Length=265, Percent_Identity=27.5471698113208, Blast_Score=91, Evalue=6e-19,
Organism=Drosophila melanogaster, GI221330018, Length=271, Percent_Identity=25.830258302583, Blast_Score=78, Evalue=7e-15,
Organism=Drosophila melanogaster, GI24586117, Length=271, Percent_Identity=25.830258302583, Blast_Score=77, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278
- InterPro:   IPR015991 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 28576; Mature: 28576

Theoretical pI: Translated: 5.18; Mature: 5.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVDSHCHLIYFSDDEIPKVISRAEQNGVKVLHNICVSIDDVPKLLKISSSYDQVYSSVG
CEECCCEEEEEECCCCHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHCC
IHPLDAAIENGECIHVDELVEFTKNQKVISIGETGLDFYKSDNKDNQKKSFALHIEASRI
CCCHHHHCCCCCEEEHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCCCCEEEEEEECCCC
TGLPLVIHTRSADNEMIDMLRSEMKAGAFSGVMHCFASSKELAYQSIDLGLCISFSGIIT
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEEEEECCEEE
FKNASLLREIAQNVPRERVLVETDAPYLSPEPYRGKKNEPAMVKYVVDCLAELWNESPEQ
ECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHH
VAKVTTSNFFRLFEL
HHHHHHHHHEEEECC
>Mature Secondary Structure
MIVDSHCHLIYFSDDEIPKVISRAEQNGVKVLHNICVSIDDVPKLLKISSSYDQVYSSVG
CEECCCEEEEEECCCCHHHHHHHHHHCHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHCC
IHPLDAAIENGECIHVDELVEFTKNQKVISIGETGLDFYKSDNKDNQKKSFALHIEASRI
CCCHHHHCCCCCEEEHHHHHHHHCCCEEEEECCCCCHHHCCCCCCCCCCEEEEEEECCCC
TGLPLVIHTRSADNEMIDMLRSEMKAGAFSGVMHCFASSKELAYQSIDLGLCISFSGIIT
CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCEEEEEECCEEE
FKNASLLREIAQNVPRERVLVETDAPYLSPEPYRGKKNEPAMVKYVVDCLAELWNESPEQ
ECCHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHH
VAKVTTSNFFRLFEL
HHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]