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The map label for this gene is ldcA [C]

Identifier: 225630680

GI number: 225630680

Start: 1045516

End: 1046499

Strand: Direct

Name: ldcA [C]

Synonym: WRi_009730

Alternate gene names: 225630680

Gene position: 1045516-1046499 (Clockwise)

Preceding gene: 225630679

Following gene: 225630686

Centisome position: 72.31

GC content: 34.86

Gene sequence:

>984_bases
ATGATTGTTTATCTTTTATATTTCATTCTCACTTTATGTGCTAACACAAGTATTCATGCAATCGACCAAGTTGATATTAT
TGCTCCTTCCTCCAAGGGAAAAGAATCAGATCTGACTACCATAAAAGAATATGTAGAAGCTTTGGATTTTAATCCCCATA
TTTCGGAGAAAATATATAGTAATGATAATCCATTTTATTCCAACTCTGATGAATTCAGAGCAAATGATTTGGTTAGTGCA
CTAACCGGTGATAGTAAAATAATCTGGTGTATCAGAGGAGGAGAAGGGGCTTCTCGGTTAATTCCCTATCTAGAAAAGTT
ACCCAATGATAAAAAAGAAAGGATTGCTCAAAACAAAAAGATCCTCATAGGCTATAGCGATATAACTGCCTTGCACATCC
ATCTACAAGCTAAATATGATTGGCAAACTCTTCACGGCACCATGTTGGAAATGATAGTAAATAACTCCGTTTCTGAAAGC
TCTGTTGAAAAATTGAAAGAGTTAATTCTTAACAAGCGGGATTCTATCAGATTTGATAACCTAAAGACGATAAATAATGG
CATTAGACTAAAAGATGGCAGATTAAAGTCTAAAATCATCGGTGGTAATATGACTTTAGTTGAAAACAGTATAGGAACTG
TTTGGCAAATAAATGCGAAAGGTAAAATTCTATTTTTAGAGGACATAAGAGTCTACCCATACGCAATAGAGCGCAGTTTA
GATCACCTAAAACAAGCTCACATCTTTGATGGAGTACATGCAGTAATCTTTGGGGATTTCGTTAACTGCTATAACGATAA
CCTTGTTGAAGTTGTAAAAGAAAGGTTTGCAAAAAGTGTTAACTTTCCTGTATTTACAATGAAAGGGGTAGGCCATGGAC
ATACAAATGATCCTTTACCTTTTAACACTCACGCTATTATTAGCGTTCAAGACGAAAAAGAAGGTTTGTTTTTTATGGAC
GTGCAGAATGTTAGCTACACATAG

Upstream 100 bases:

>100_bases
TGCAAGATTATGGCGTCACGTCAATGGAAGAACTAGGAGTGAAAGTTCCACTCTCTGAATTGGATGATATACTAAAAAAA
GAGTTTTATAAGATATTTTA

Downstream 100 bases:

>100_bases
CTGATAGCTCACTAGGCTTCTTTTGAAATTGTTAAGGTAATTGTCATCCCAGTGCCCTGACTACTTGGATCCAGAAGACT
TAATTTTAACCAAGCAGGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MIVYLLYFILTLCANTSIHAIDQVDIIAPSSKGKESDLTTIKEYVEALDFNPHISEKIYSNDNPFYSNSDEFRANDLVSA
LTGDSKIIWCIRGGEGASRLIPYLEKLPNDKKERIAQNKKILIGYSDITALHIHLQAKYDWQTLHGTMLEMIVNNSVSES
SVEKLKELILNKRDSIRFDNLKTINNGIRLKDGRLKSKIIGGNMTLVENSIGTVWQINAKGKILFLEDIRVYPYAIERSL
DHLKQAHIFDGVHAVIFGDFVNCYNDNLVEVVKERFAKSVNFPVFTMKGVGHGHTNDPLPFNTHAIISVQDEKEGLFFMD
VQNVSYT

Sequences:

>Translated_327_residues
MIVYLLYFILTLCANTSIHAIDQVDIIAPSSKGKESDLTTIKEYVEALDFNPHISEKIYSNDNPFYSNSDEFRANDLVSA
LTGDSKIIWCIRGGEGASRLIPYLEKLPNDKKERIAQNKKILIGYSDITALHIHLQAKYDWQTLHGTMLEMIVNNSVSES
SVEKLKELILNKRDSIRFDNLKTINNGIRLKDGRLKSKIIGGNMTLVENSIGTVWQINAKGKILFLEDIRVYPYAIERSL
DHLKQAHIFDGVHAVIFGDFVNCYNDNLVEVVKERFAKSVNFPVFTMKGVGHGHTNDPLPFNTHAIISVQDEKEGLFFMD
VQNVSYT
>Mature_327_residues
MIVYLLYFILTLCANTSIHAIDQVDIIAPSSKGKESDLTTIKEYVEALDFNPHISEKIYSNDNPFYSNSDEFRANDLVSA
LTGDSKIIWCIRGGEGASRLIPYLEKLPNDKKERIAQNKKILIGYSDITALHIHLQAKYDWQTLHGTMLEMIVNNSVSES
SVEKLKELILNKRDSIRFDNLKTINNGIRLKDGRLKSKIIGGNMTLVENSIGTVWQINAKGKILFLEDIRVYPYAIERSL
DHLKQAHIFDGVHAVIFGDFVNCYNDNLVEVVKERFAKSVNFPVFTMKGVGHGHTNDPLPFNTHAIISVQDEKEGLFFMD
VQNVSYT

Specific function: L,D-carboxypeptidase [C]

COG id: COG1619

COG function: function code V; Uncharacterized proteins, homologs of microcin C7 resistance protein MccF

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S66 family [H]

Homologues:

Organism=Escherichia coli, GI1787441, Length=260, Percent_Identity=27.3076923076923, Blast_Score=79, Evalue=4e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003507 [H]

Pfam domain/function: PF02016 Peptidase_S66 [H]

EC number: NA

Molecular weight: Translated: 37057; Mature: 37057

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVYLLYFILTLCANTSIHAIDQVDIIAPSSKGKESDLTTIKEYVEALDFNPHISEKIYS
CHHHHHHHHHHHHCCCCEEEECEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHCC
NDNPFYSNSDEFRANDLVSALTGDSKIIWCIRGGEGASRLIPYLEKLPNDKKERIAQNKK
CCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCHHHHHHCCCE
ILIGYSDITALHIHLQAKYDWQTLHGTMLEMIVNNSVSESSVEKLKELILNKRDSIRFDN
EEEEECCEEEEEEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCC
LKTINNGIRLKDGRLKSKIIGGNMTLVENSIGTVWQINAKGKILFLEDIRVYPYAIERSL
EEECCCCEEEECCCCEEEEECCCEEEEECCCCCEEEECCCCEEEEEECCEECHHHHHHHH
DHLKQAHIFDGVHAVIFGDFVNCYNDNLVEVVKERFAKSVNFPVFTMKGVGHGHTNDPLP
HHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
FNTHAIISVQDEKEGLFFMDVQNVSYT
CCCEEEEEEECCCCCEEEEEECCCCCC
>Mature Secondary Structure
MIVYLLYFILTLCANTSIHAIDQVDIIAPSSKGKESDLTTIKEYVEALDFNPHISEKIYS
CHHHHHHHHHHHHCCCCEEEECEEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHCC
NDNPFYSNSDEFRANDLVSALTGDSKIIWCIRGGEGASRLIPYLEKLPNDKKERIAQNKK
CCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHCCCCHHHHHHCCCE
ILIGYSDITALHIHLQAKYDWQTLHGTMLEMIVNNSVSESSVEKLKELILNKRDSIRFDN
EEEEECCEEEEEEEEEEECCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCC
LKTINNGIRLKDGRLKSKIIGGNMTLVENSIGTVWQINAKGKILFLEDIRVYPYAIERSL
EEECCCCEEEECCCCEEEEECCCEEEEECCCCCEEEECCCCEEEEEECCEECHHHHHHHH
DHLKQAHIFDGVHAVIFGDFVNCYNDNLVEVVKERFAKSVNFPVFTMKGVGHGHTNDPLP
HHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
FNTHAIISVQDEKEGLFFMDVQNVSYT
CCCEEEEEEECCCCCEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]