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The map label for this gene is radC [C]

Identifier: 225630427

GI number: 225630427

Start: 715135

End: 715794

Strand: Direct

Name: radC [C]

Synonym: WRi_006620

Alternate gene names: 225630427

Gene position: 715135-715794 (Clockwise)

Preceding gene: 225630423

Following gene: 225630429

Centisome position: 49.46

GC content: 35.45

Gene sequence:

>660_bases
ATGAATAATAGTGAGAGAAAAGAAAAATTGGAAACTCGCATTTTATCAAGTAGAGGAAGGTCTTTACTTGACCATGAGCT
ACTGGAACGTACTCTATCTGAATGTGAAGAAGGAAGAGAAGTGGCCAAAAAGCTAATAGAGCTCTTTAGTAGTTTAGGAA
GGGTAATTAACGCTGACTTTCATGAGCTAAAAAATGTTACAGGAATGAATGATGGAGCAATAGCAAGTATCTTTTGTCTG
AAAGAGATTTTCGATAGGATACTGAAAGGTAAGTTAAAAAAGCTGTCGATTCTTGATAACAGAGAAGAGCTACTAAAATA
CTTTAAAACAGCAATAGGGCAGTCACGAAAGGAAAGCTTGCGAGTAATATACTTAGATCGAAGTGGTCATTTGATATACG
AGTATATTCAAGACTGTGGAACTATAGACAGAGTACCTCTATATGTGAGAGAAATAATCAAACAGGGATTACTGATCGAT
GCATCATCTATTGCAATTTCACATAATCATCCAAGTGGAGATACAGAACCATCAAAGGAGGATGAGGATAACACACTTAC
ATTAGCTGCAACCTGCGAAAATGTAGGAATGAAATTAATAGATCACATAATCGTAACACAGAAGAGCCACTTTAGTTTTT
ATGATAGTGGTTTATTGTAA

Upstream 100 bases:

>100_bases
AACATTGCAAATTTAGAGTTCAAAAGGGTTATTCCTCGAGAACTACTGCGTCAGAAAGCTGGCGTTGAATTTGTATATAA
TGTTGACCTTGGAGGTTTTT

Downstream 100 bases:

>100_bases
TCTGTAGACCGGAAGGAAAGTTCTCCAACTTTCCTTCTTTTTTTCTACTTCATAAATTAAAAAATTCAATATAAGCTTGA
GCAGCTAAAATTAGTAATGA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MNNSERKEKLETRILSSRGRSLLDHELLERTLSECEEGREVAKKLIELFSSLGRVINADFHELKNVTGMNDGAIASIFCL
KEIFDRILKGKLKKLSILDNREELLKYFKTAIGQSRKESLRVIYLDRSGHLIYEYIQDCGTIDRVPLYVREIIKQGLLID
ASSIAISHNHPSGDTEPSKEDEDNTLTLAATCENVGMKLIDHIIVTQKSHFSFYDSGLL

Sequences:

>Translated_219_residues
MNNSERKEKLETRILSSRGRSLLDHELLERTLSECEEGREVAKKLIELFSSLGRVINADFHELKNVTGMNDGAIASIFCL
KEIFDRILKGKLKKLSILDNREELLKYFKTAIGQSRKESLRVIYLDRSGHLIYEYIQDCGTIDRVPLYVREIIKQGLLID
ASSIAISHNHPSGDTEPSKEDEDNTLTLAATCENVGMKLIDHIIVTQKSHFSFYDSGLL
>Mature_219_residues
MNNSERKEKLETRILSSRGRSLLDHELLERTLSECEEGREVAKKLIELFSSLGRVINADFHELKNVTGMNDGAIASIFCL
KEIFDRILKGKLKKLSILDNREELLKYFKTAIGQSRKESLRVIYLDRSGHLIYEYIQDCGTIDRVPLYVREIIKQGLLID
ASSIAISHNHPSGDTEPSKEDEDNTLTLAATCENVGMKLIDHIIVTQKSHFSFYDSGLL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=202, Percent_Identity=28.2178217821782, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI2367100, Length=114, Percent_Identity=34.2105263157895, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788312, Length=103, Percent_Identity=38.8349514563107, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788997, Length=113, Percent_Identity=31.858407079646, Blast_Score=78, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 24898; Mature: 24898

Theoretical pI: Translated: 6.40; Mature: 6.40

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNSERKEKLETRILSSRGRSLLDHELLERTLSECEEGREVAKKLIELFSSLGRVINADF
CCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
HELKNVTGMNDGAIASIFCLKEIFDRILKGKLKKLSILDNREELLKYFKTAIGQSRKESL
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHCCE
RVIYLDRSGHLIYEYIQDCGTIDRVPLYVREIIKQGLLIDASSIAISHNHPSGDTEPSKE
EEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEHHHEEEECCCCCCCCCCCCC
DEDNTLTLAATCENVGMKLIDHIIVTQKSHFSFYDSGLL
CCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCHHHCCCCC
>Mature Secondary Structure
MNNSERKEKLETRILSSRGRSLLDHELLERTLSECEEGREVAKKLIELFSSLGRVINADF
CCCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
HELKNVTGMNDGAIASIFCLKEIFDRILKGKLKKLSILDNREELLKYFKTAIGQSRKESL
HHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHCCE
RVIYLDRSGHLIYEYIQDCGTIDRVPLYVREIIKQGLLIDASSIAISHNHPSGDTEPSKE
EEEEECCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCEEEHHHEEEECCCCCCCCCCCCC
DEDNTLTLAATCENVGMKLIDHIIVTQKSHFSFYDSGLL
CCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA